Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RS401_RS06550 Genome accession   NZ_CP135601
Coordinates   1269420..1269743 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus sp. SI2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264420..1274743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS06525 (RS401_06525) - 1264683..1265969 (+) 1287 WP_153577157.1 D-alanyl-D-alanine carboxypeptidase family protein -
  RS401_RS06530 (RS401_06530) sipW 1266164..1266733 (+) 570 WP_315839304.1 signal peptidase I SipW -
  RS401_RS06535 (RS401_06535) - 1266794..1267381 (+) 588 WP_000172852.1 CalY family protein -
  RS401_RS06540 (RS401_06540) - 1267516..1268358 (+) 843 WP_315839305.1 DUF4047 domain-containing protein -
  RS401_RS06545 (RS401_06545) calY 1268751..1269344 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  RS401_RS06550 (RS401_06550) sinR 1269420..1269743 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  RS401_RS06555 (RS401_06555) - 1269823..1269957 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  RS401_RS06560 (RS401_06560) inhA1 1270301..1272688 (+) 2388 WP_001035925.1 M6 family metalloprotease immune inhibitor InhA1 -
  RS401_RS06565 (RS401_06565) - 1272860..1274227 (+) 1368 WP_001990952.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=887107 RS401_RS06550 WP_000578878.1 1269420..1269743(-) (sinR) [Bacillus sp. SI2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=887107 RS401_RS06550 WP_000578878.1 1269420..1269743(-) (sinR) [Bacillus sp. SI2]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692