Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RS401_RS00075 Genome accession   NZ_CP135601
Coordinates   11781..12065 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. SI2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 6781..17065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS00040 (RS401_00040) tmk 6935..7561 (+) 627 WP_000677237.1 dTMP kinase -
  RS401_RS00045 (RS401_00045) holB 7597..8580 (+) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  RS401_RS00050 (RS401_00050) - 8586..9413 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  RS401_RS00055 (RS401_00055) yabA 9428..9778 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  RS401_RS00060 (RS401_00060) - 9899..10639 (+) 741 WP_001055361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RS401_RS00065 (RS401_00065) - 10626..10916 (+) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  RS401_RS00070 (RS401_00070) rsmI 10885..11760 (+) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RS401_RS00075 (RS401_00075) abrB 11781..12065 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RS401_RS00080 (RS401_00080) metG 12556..14538 (+) 1983 WP_002195082.1 methionine--tRNA ligase -
  RS401_RS00085 (RS401_00085) - 14704..15471 (+) 768 WP_000895823.1 TatD family hydrolase -
  RS401_RS00090 (RS401_00090) rnmV 15686..16243 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=887091 RS401_RS00075 WP_000843036.1 11781..12065(-) (abrB) [Bacillus sp. SI2]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=887091 RS401_RS00075 WP_000843036.1 11781..12065(-) (abrB) [Bacillus sp. SI2]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATTGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851