Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   RSK81_RS11420 Genome accession   NZ_CP135591
Coordinates   2316009..2316404 (-) Length   131 a.a.
NCBI ID   WP_002896737.1    Uniprot ID   A0A0B7GMJ4
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2311009..2321404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS11400 (RSK81_11400) - 2311470..2312753 (-) 1284 WP_002911095.1 ABC transporter substrate-binding protein -
  RSK81_RS11405 (RSK81_11405) - 2312750..2313433 (-) 684 WP_002911094.1 response regulator transcription factor -
  RSK81_RS11410 (RSK81_11410) - 2313426..2314742 (-) 1317 WP_002911092.1 sensor histidine kinase -
  RSK81_RS11415 (RSK81_11415) - 2314742..2315728 (-) 987 WP_002903471.1 substrate-binding domain-containing protein -
  RSK81_RS11420 (RSK81_11420) ssbB/cilA 2316009..2316404 (-) 396 WP_002896737.1 single-stranded DNA-binding protein Machinery gene
  RSK81_RS11425 (RSK81_11425) - 2316534..2317121 (+) 588 WP_002911087.1 hypothetical protein -
  RSK81_RS11430 (RSK81_11430) ytpR 2317620..2318246 (-) 627 WP_002903477.1 YtpR family tRNA-binding protein -
  RSK81_RS11435 (RSK81_11435) - 2318243..2318578 (-) 336 WP_002903478.1 thioredoxin family protein -
  RSK81_RS11440 (RSK81_11440) - 2318575..2318862 (-) 288 WP_002903480.1 DUF4651 domain-containing protein -
  RSK81_RS11445 (RSK81_11445) pepA 2319033..2320097 (+) 1065 WP_002903482.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14711.57 Da        Isoelectric Point: 6.7246

>NTDB_id=887052 RSK81_RS11420 WP_002896737.1 2316009..2316404(-) (ssbB/cilA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MYNKVIVIGRLTATPELHKTANEKSVARATVAVNRRYKSQSGEREADFVNVVVWGRLAETLASYASKGSLISLDGELRTR
RYEKEGATHYVTEVLCHSFQLLESRAQRALRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=887052 RSK81_RS11420 WP_002896737.1 2316009..2316404(-) (ssbB/cilA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGTATAATAAAGTAATTGTAATCGGCCGGCTGACGGCTACGCCTGAACTGCACAAGACTGCGAATGAAAAATCTGTGGC
CCGCGCAACGGTCGCGGTTAATCGTCGTTATAAATCTCAGAGTGGTGAGCGTGAAGCGGATTTTGTAAATGTCGTTGTCT
GGGGTCGTCTAGCTGAGACTTTAGCCAGCTATGCAAGTAAGGGCAGCTTGATTTCTCTGGATGGTGAGCTACGGACTCGT
CGCTATGAAAAGGAGGGGGCGACACATTATGTGACAGAGGTGCTCTGTCATAGCTTCCAGCTGCTGGAAAGTCGGGCCCA
GCGCGCTCTGCGTGAAAATAATAGCGGAGCTGATTTAGCAGATTTGGTGTTGGAAGAAGAGGAACTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7GMJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366