Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RSK81_RS10180 Genome accession   NZ_CP135591
Coordinates   2059531..2060262 (-) Length   243 a.a.
NCBI ID   WP_061592623.1    Uniprot ID   A0AA96NR17
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2054531..2065262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS10150 (RSK81_10150) rnpM 2054697..2054993 (-) 297 WP_315686709.1 RNase P modulator RnpM -
  RSK81_RS10155 (RSK81_10155) nusA 2055004..2056260 (-) 1257 WP_315686711.1 transcription termination factor NusA -
  RSK81_RS10160 (RSK81_10160) rimP 2056320..2056808 (-) 489 WP_032912391.1 ribosome maturation factor RimP -
  RSK81_RS10165 (RSK81_10165) trmB 2057008..2057646 (-) 639 WP_002920086.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RSK81_RS10170 (RSK81_10170) ccrZ 2057643..2058437 (-) 795 WP_002893562.1 cell cycle regulator CcrZ -
  RSK81_RS10175 (RSK81_10175) - 2058488..2059534 (-) 1047 WP_315686714.1 ABC transporter permease -
  RSK81_RS10180 (RSK81_10180) pptA 2059531..2060262 (-) 732 WP_061592623.1 ABC transporter ATP-binding protein Regulator
  RSK81_RS10185 (RSK81_10185) - 2060331..2060741 (+) 411 WP_315686716.1 HIT family protein -
  RSK81_RS10190 (RSK81_10190) - 2060751..2061038 (+) 288 WP_002896907.1 hypothetical protein -
  RSK81_RS10195 (RSK81_10195) - 2061170..2063830 (-) 2661 WP_315686718.1 molecular chaperone DnaJ -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27173.69 Da        Isoelectric Point: 4.8143

>NTDB_id=887049 RSK81_RS10180 WP_061592623.1 2059531..2060262(-) (pptA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MLEIKELTGGYVNIPVLKDVSFEVGNGQLVGLIGLNGAGKSTTINEIIGLLTPYKGQIQIDGLELRTNPSDYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDIEQETAFKRVDKLLEMFRLKEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIQLLDEEKKKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGSLTELRAQFQMPDAGLNDIYLALTEE
AAL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=887049 RSK81_RS10180 WP_061592623.1 2059531..2060262(-) (pptA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGTTAGAAATCAAAGAGCTTACGGGCGGCTATGTTAATATCCCGGTTTTAAAGGATGTCAGCTTTGAAGTGGGCAATGG
CCAGCTGGTTGGTCTGATTGGTCTCAACGGTGCAGGCAAGTCCACGACTATCAATGAGATTATTGGTCTTCTGACGCCTT
ATAAGGGGCAGATTCAGATTGATGGACTGGAGCTGCGGACCAATCCCAGCGATTACCGCAAGAAGATCGGTTTTATTCCG
GAAACGCCTAGTCTCTATGAAGAATTAACCCTGCGCGAGCACATTGAAACGGTAGCTATGGCATACGACATTGAGCAGGA
AACAGCTTTTAAGCGCGTGGATAAGTTATTGGAAATGTTCCGACTCAAGGAAAAACTGGATTGGTTCCCTGTTCACTTTT
CAAAAGGGATGAAGCAAAAAGTGATGATTATCTGTGCTTTTGTAGTTGATCCCAGCCTTTTTATCGTAGATGAGCCTTTT
CTGGGGCTGGATCCGGTAGCTATTGCAGACCTTATTCAGCTCTTGGATGAGGAAAAGAAGAAGGGAAAGTCGATTCTGAT
GAGCACCCATGTTCTGGACTCTGCCGAGAAGATGTGCGATAGTTTTGTAATCTTGCACAAGGGTCAAGTACGGGCCAAGG
GCAGCTTGACTGAGTTGCGGGCCCAATTTCAAATGCCGGATGCTGGTCTGAATGACATCTACCTAGCCCTGACAGAAGAG
GCAGCGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.64

98.354

0.724
  pptA Streptococcus thermophilus LMD-9

72.803

98.354

0.716