Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RSK81_RS09395 Genome accession   NZ_CP135591
Coordinates   1904007..1904720 (+) Length   237 a.a.
NCBI ID   WP_023916584.1    Uniprot ID   A0AA96SHZ9
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899007..1909720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS09380 (RSK81_09380) - 1899636..1899776 (+) 141 WP_002923591.1 hypothetical protein -
  RSK81_RS09385 (RSK81_09385) treC 1900073..1901701 (-) 1629 WP_002923588.1 alpha,alpha-phosphotrehalase -
  RSK81_RS09390 (RSK81_09390) treP 1901774..1903819 (-) 2046 WP_032915425.1 PTS system trehalose-specific EIIBC component -
  RSK81_RS09395 (RSK81_09395) treR 1904007..1904720 (+) 714 WP_023916584.1 trehalose operon repressor Regulator
  RSK81_RS09400 (RSK81_09400) - 1905087..1906427 (-) 1341 WP_004190628.1 hemolysin family protein -
  RSK81_RS09405 (RSK81_09405) - 1906579..1907703 (-) 1125 WP_004190625.1 AI-2E family transporter -
  RSK81_RS09410 (RSK81_09410) - 1907778..1908572 (+) 795 WP_004190623.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27782.73 Da        Isoelectric Point: 8.2487

>NTDB_id=887043 RSK81_RS09395 WP_023916584.1 1904007..1904720(+) (treR) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MKKYKQLFKQIEKDILEERYAVGDFLPSEHQLTEDYQVSRDTVRKALALLQEEGLIEKVRGQGSKVIKHEQFDFPVSKLT
SYQEVVKQNNMQSKTNVVSLEKITVDQKLSDITGFPPYRLVWRIVRQRVVDQVASVLDIDYLDKGIVPDLTREIAEQSIY
AYLENDLKLNIAYAKKEFTIDHANDRDKILMDLGKDQQVVSVKSQVYLADGRQFQYTESRHKLDKFRFVDFAKRQKE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=887043 RSK81_RS09395 WP_023916584.1 1904007..1904720(+) (treR) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGAAGAAATACAAACAATTATTCAAACAGATTGAGAAAGATATTTTAGAGGAACGTTATGCAGTCGGAGACTTCTTGCC
CAGTGAACATCAGCTGACAGAAGACTACCAGGTTAGCCGCGACACGGTGCGCAAGGCTCTGGCCCTGCTGCAGGAAGAAG
GATTGATTGAAAAAGTCCGCGGACAGGGTTCCAAAGTCATCAAGCATGAACAGTTTGACTTTCCTGTGTCTAAGCTGACC
AGCTATCAAGAAGTAGTCAAGCAGAATAATATGCAGTCCAAAACCAATGTTGTCAGCTTGGAAAAGATTACCGTAGATCA
GAAACTGTCCGACATCACTGGTTTCCCTCCCTACCGACTGGTTTGGCGAATCGTCCGTCAGCGCGTTGTAGACCAAGTCG
CCTCTGTCTTAGATATTGACTATTTAGACAAGGGAATCGTCCCTGACTTGACAAGGGAAATCGCTGAGCAGTCCATTTAT
GCTTATTTGGAAAATGACTTAAAACTTAACATTGCCTATGCCAAAAAGGAATTTACCATTGACCACGCCAATGACCGAGA
CAAGATTCTCATGGACCTAGGCAAGGATCAGCAGGTCGTCTCTGTCAAATCCCAGGTCTATCTGGCAGACGGCCGCCAGT
TTCAATATACCGAGAGCCGTCACAAGCTAGACAAATTTCGCTTTGTGGATTTCGCTAAGCGTCAGAAAGAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.338

100

0.603