Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RSK81_RS03925 Genome accession   NZ_CP135591
Coordinates   768842..770644 (+) Length   600 a.a.
NCBI ID   WP_032908209.1    Uniprot ID   A0AA96NSY9
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 763842..775644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS03900 (RSK81_03900) coiA 765119..766072 (+) 954 WP_032911178.1 competence protein CoiA Machinery gene
  RSK81_RS03905 (RSK81_03905) - 766228..766638 (+) 411 WP_002913758.1 DUF1310 family protein -
  RSK81_RS03910 (RSK81_03910) - 766976..767383 (+) 408 WP_002913757.1 DUF1310 family protein -
  RSK81_RS03915 (RSK81_03915) - 767536..767928 (+) 393 WP_002913753.1 DUF1310 family protein -
  RSK81_RS03920 (RSK81_03920) - 768260..768646 (+) 387 WP_002913751.1 DUF1310 family protein -
  RSK81_RS03925 (RSK81_03925) pepF 768842..770644 (+) 1803 WP_032908209.1 oligoendopeptidase F Regulator
  RSK81_RS03930 (RSK81_03930) - 770646..771329 (+) 684 WP_002934458.1 O-methyltransferase -
  RSK81_RS03935 (RSK81_03935) prsA 771443..772450 (+) 1008 WP_049553460.1 peptidylprolyl isomerase PrsA -
  RSK81_RS03940 (RSK81_03940) - 772591..773172 (+) 582 WP_161800761.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69152.27 Da        Isoelectric Point: 4.6240

>NTDB_id=887029 RSK81_RS03925 WP_032908209.1 768842..770644(+) (pepF) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MAKQRNEIEEKYTWDLSTIFPTDEAFEAELAQVSEEVKKAASLAGHLLDSADSLLTTTEVQLNLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTLYSDFGQSFAFYEPEFMAITEEQYQAFLAEKPALQLYQHYFDKLLKKKAHILTQREEELLAGA
GEIFGAAGETFSILDNADIVFPIVHDEDGNEVQLSHGNYITLVESKNREVRKEAYEALYRVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSADFIPESVYDSLVSAVNKHLPLLQRYIALRAKILGISDLKMYDMYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTGEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=887029 RSK81_RS03925 WP_032908209.1 768842..770644(+) (pepF) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACCTGGGATTTGAGTACTATTTTCCCAACAGATGAAGCCTTTGA
AGCGGAATTGGCGCAGGTTTCAGAAGAAGTGAAGAAAGCAGCTAGTCTGGCTGGGCATTTGCTGGATTCAGCGGATAGTC
TCTTAACAACGACTGAAGTGCAACTGAACTTGATGCGTCGTATTGAAAAGCTTTATTCTTATGCTCATATGAAGAATGAC
CAGGATACACGTGTGGCTAAGTACCAAGAGTATCAGGCTAAAGGCATGACTCTTTACAGCGATTTTGGTCAAAGCTTTGC
CTTCTACGAGCCCGAATTTATGGCGATTACAGAAGAACAGTACCAAGCTTTCCTAGCTGAGAAGCCAGCCCTGCAGCTGT
ACCAGCATTATTTTGACAAGCTTTTGAAAAAGAAAGCCCACATCCTGACACAGCGCGAAGAGGAGCTATTGGCCGGTGCT
GGTGAAATTTTTGGGGCAGCGGGCGAAACCTTTTCTATTTTGGATAATGCAGATATCGTCTTTCCTATAGTGCATGATGA
AGATGGAAATGAAGTTCAGCTCAGCCACGGTAACTATATCACCCTGGTCGAGTCTAAGAACCGAGAAGTCCGTAAGGAAG
CTTACGAGGCTCTCTACAGAGTATACGAGCAGTATCAGCATACCTATGCTAAGACTCTGCAGACCAATGTCAAGGTTCAC
AATTACAATGCGAAAGTCCGCAAGTTTTCATCTGCCCGTGAAGCAGCCTTGTCAGCGGACTTCATTCCAGAAAGTGTTTA
TGACAGCTTAGTTTCAGCTGTCAATAAGCATTTGCCTCTTTTGCAGCGTTATATTGCTTTACGAGCAAAGATTTTAGGCA
TTTCTGATTTGAAGATGTATGATATGTACACACCTTTGTCAGAGACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCCTGGCAATTCTGGGTGAGGATTATCTGAGCCGAGTGAAGACAGCTTTTTCAGAGCGCTGGATTGA
TGTTCATGAAAATCAAGGCAAGCGCTCAGGGGCATACTCTGGCGGTTCTTATGACACCAACGCCTTTATGTTGCTCAACT
GGCAGGACACGCTGGATAATCTCTTTACCTTGGTGCACGAGACAGGCCACAGTATGCACTCCAGCTACACCCGTGAGACC
CAGCCTTATGTCTATGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCGACGACCAATGAAAACATCCTGACAGAAAA
GCTCTTGGAAGAAGTAGAAGATGATGCTACCCGCTTTGCTATCCTCAATCACTTCTTGGATGGCTTTAGAGGTACGGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAACATGCTATCCACAAGGCTGACCAAGAAGGTCAAGTCTTGACCGGCGAGTTT
CTCAATGAGCTCTACGCTGACTTGAACGAAAAATACTATGGACTGAAAAAAGAAGACAATCCACAGATTCAGTACGAATG
GGCTCGGATTCCTCATTTCTACTATGATTACTATGTTTTCCAATATTCGACAGGATTTTCAGCGGCTTCTGCCCTGGCTG
AAAAGATTGTCCATGGCAGTCAGGAAGACAAGGATAAGTATCTGGACTATCTGAAAGCTGGGAACTCTGACTATCCGCTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAAAAGGAAGACTACCTAAATGCTGCTTTTGCTGTCTTTGAGCGTCGCTT
GGACGAATTTGAAGCCTTGGTAGAAAAGTTGGGACTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683