Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RRL06_RS14290 Genome accession   NZ_CP135502
Coordinates   2936740..2937369 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain isolateA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2931740..2942369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL06_RS14275 (RRL06_14275) helD 2931982..2934036 (-) 2055 WP_001295354.1 DNA helicase IV -
  RRL06_RS14280 (RRL06_14280) yccF 2934159..2934605 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RRL06_RS14285 (RRL06_14285) yccS 2934615..2936777 (+) 2163 WP_000875058.1 YccS family putative transporter -
  RRL06_RS14290 (RRL06_14290) sxy/tfoX 2936740..2937369 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RRL06_RS14295 (RRL06_14295) sulA 2937588..2938097 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RRL06_RS14300 (RRL06_14300) ompA 2938454..2939494 (+) 1041 WP_000750416.1 porin OmpA -
  RRL06_RS14305 (RRL06_14305) matP 2939570..2940022 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RRL06_RS14310 (RRL06_14310) ycbZ 2940208..2941968 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=886916 RRL06_RS14290 WP_000839153.1 2936740..2937369(-) (sxy/tfoX) [Escherichia coli strain isolateA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=886916 RRL06_RS14290 WP_000839153.1 2936740..2937369(-) (sxy/tfoX) [Escherichia coli strain isolateA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1