Detailed information NTG0088689

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: EUBC25_RS09685
• Genome accession: NZ_AP024845
• Coordinates: 1977099..1978457 (+)
• Length: 452 a.a.
• NCBI ID: WP_230105288.1
• Uniprot ID: -
• Organism: Claveliimonas bilis strain c-25
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1972099..1983457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EUBC25_RS09660 (EUBC25_18780)	-	1972378..1972746 (+)	369	WP_230105283.1	GntR family transcriptional regulator	-
EUBC25_RS09665 (EUBC25_18790)	-	1972825..1975260 (+)	2436	WP_230105284.1	ATP-dependent Clp protease ATP-binding subunit	-
EUBC25_RS09670 (EUBC25_18800)	-	1975319..1975732 (+)	414	WP_230105285.1	endosialidase	-
EUBC25_RS09675 (EUBC25_18810)	-	1975813..1976310 (-)	498	WP_230105286.1	GNAT family N-acetyltransferase	-
EUBC25_RS09680 (EUBC25_18820)	-	1976488..1977048 (+)	561	WP_230105287.1	helix-turn-helix domain-containing protein	-
EUBC25_RS09685 (EUBC25_18830)	radA	1977099..1978457 (+)	1359	WP_230105288.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49251.85 Da
• Isoelectric Point: 6.9213

>NTDB_id=88689 EUBC25_RS09685 WP_230105288.1 1977099..1978457(+) (radA) [Claveliimonas bilis strain c-25]
MAKAKKTIFFCQNCGHEESKWLGQCPACREWNTFVEEKITPVKGAAAGKSVREGEVVTLSSVRTDGEERIKTDIQELDRV
LGGGIVPGSLVLVGGDPGIGKSTLLLQVCQKLSGKKESVLYISGEESLKQIKLRADRMGKFSEDLLLLCETNLETIRQTI
ERQKPHLAIIDSIQTMYSEEIGSAPGSVSQVREATNTFMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGD
RHASYRILRGVKNRFGSTNEIGVFEMRQTGLEEVANPSEFMLSGKPENASGSVVACSMEGTRPILMEIQALVCASNFGFP
RRTAAGTDYNRVNLLMAVLEKRMGLPLSNYDAYVNIAGGIRMNEPAVDLGIVMAIFSSYKNRPVPEDMIVFGEVGLSGEV
RAVSMPEQRVSEAKKLGFKTCVIPSVSENAVKNIEGIRVIGVRSVSEAIQLL

Nucleotide

• Length: 1359 bp

>NTDB_id=88689 EUBC25_RS09685 WP_230105288.1 1977099..1978457(+) (radA) [Claveliimonas bilis strain c-25]
GTGGCAAAAGCGAAAAAGACAATTTTTTTCTGCCAGAACTGCGGACATGAAGAGAGCAAATGGCTGGGACAGTGTCCGGC
ATGTCGGGAGTGGAATACATTTGTAGAGGAAAAGATCACGCCGGTAAAAGGCGCGGCAGCAGGGAAAAGTGTAAGGGAAG
GGGAAGTAGTCACTCTTTCCAGTGTGAGAACCGACGGTGAAGAGAGGATAAAGACAGACATACAGGAACTGGATCGTGTG
CTGGGAGGGGGAATTGTCCCCGGTTCTCTCGTGTTGGTAGGAGGAGATCCGGGAATCGGTAAATCAACCCTTCTCCTTCA
GGTATGCCAAAAACTGTCCGGAAAAAAAGAAAGCGTACTTTATATTTCCGGGGAAGAGTCGCTGAAGCAGATAAAACTTA
GAGCTGACCGCATGGGGAAATTTTCAGAAGATCTGCTTCTTCTGTGTGAGACGAATCTGGAAACGATCCGGCAGACCATT
GAGAGGCAGAAGCCCCATCTTGCGATCATTGATTCTATACAGACAATGTACAGCGAAGAGATAGGCTCTGCTCCGGGAAG
TGTTTCCCAGGTAAGAGAGGCAACGAATACGTTTATGCAGCTTGCCAAGGGACTGGGGATTTCTATTTTTATAGTAGGTC
ATGTGACAAAAGAAGGAACAGTGGCCGGCCCCAGGGTATTGGAGCATATGGTAGATACAGTGCTGTATTTTGAGGGAGAT
CGGCATGCTTCCTACCGGATTTTGCGGGGAGTGAAAAACCGTTTTGGCTCCACCAATGAGATCGGTGTGTTTGAAATGCG
TCAGACAGGGCTGGAAGAAGTAGCGAACCCGTCGGAATTTATGCTGAGTGGAAAGCCGGAAAATGCTTCGGGATCTGTGG
TGGCATGTTCTATGGAAGGGACAAGGCCTATTTTGATGGAAATACAGGCTCTGGTCTGTGCCAGCAATTTCGGTTTCCCG
AGAAGAACGGCAGCAGGGACAGACTACAACAGAGTGAATCTCCTTATGGCGGTACTGGAAAAGCGCATGGGACTTCCGCT
TTCCAACTATGATGCCTATGTCAATATTGCCGGAGGGATCAGGATGAATGAACCGGCAGTGGATCTGGGTATTGTCATGG
CGATTTTCTCAAGTTATAAAAACCGCCCGGTGCCGGAGGATATGATCGTCTTCGGCGAAGTGGGATTAAGCGGCGAAGTC
CGCGCAGTGAGTATGCCGGAGCAGAGAGTGTCCGAAGCAAAGAAGCTGGGATTTAAGACATGTGTGATCCCATCGGTATC
TGAAAATGCAGTGAAAAATATAGAAGGGATCCGGGTGATCGGGGTGAGAAGTGTCAGTGAGGCGATTCAGCTGTTGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-425)

• AAA domain (AAA_25) (68-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	58.242	100	0.586
radA	Streptococcus mitis NCTC 12261	54.545	99.779	0.544
radA	Streptococcus pneumoniae Rx1	54.545	99.779	0.544
radA	Streptococcus pneumoniae D39	54.545	99.779	0.544
radA	Streptococcus pneumoniae R6	54.545	99.779	0.544
radA	Streptococcus pneumoniae TIGR4	54.545	99.779	0.544
radA	Streptococcus mitis SK321	54.545	99.779	0.544