Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RRL13_RS07665 Genome accession   NZ_CP135498
Coordinates   1656889..1657515 (+) Length   208 a.a.
NCBI ID   WP_182060340.1    Uniprot ID   -
Organism   Enterobacter cloacae strain isolateB     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1651889..1662515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL13_RS07645 (RRL13_07645) - 1652286..1654046 (-) 1761 WP_315688250.1 Lon protease family protein -
  RRL13_RS07650 (RRL13_07650) matP 1654233..1654685 (+) 453 WP_182060337.1 macrodomain Ter protein MatP -
  RRL13_RS07655 (RRL13_07655) ompA 1654751..1655806 (-) 1056 WP_182060338.1 porin OmpA -
  RRL13_RS07660 (RRL13_07660) sulA 1656162..1656671 (-) 510 WP_315688251.1 SOS-induced cell division inhibitor SulA -
  RRL13_RS07665 (RRL13_07665) sxy/tfoX 1656889..1657515 (+) 627 WP_182060340.1 TfoX/Sxy family DNA transformation protein Regulator
  RRL13_RS07670 (RRL13_07670) yccS 1657472..1659634 (-) 2163 WP_182060341.1 YccS family putative transporter -
  RRL13_RS07675 (RRL13_07675) - 1659654..1660100 (-) 447 WP_182060342.1 YccF domain-containing protein -
  RRL13_RS07680 (RRL13_07680) helD 1660224..1662278 (+) 2055 WP_315688252.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24031.61 Da        Isoelectric Point: 8.0228

>NTDB_id=886883 RRL13_RS07665 WP_182060340.1 1656889..1657515(+) (sxy/tfoX) [Enterobacter cloacae strain isolateB]
MKKISYERIYKSQEYLSELGDIHHRALFGGYTLAVDNAVFAMVSDGELYLRACEQSATYYVKHASSFLTLLKRGRPVLLN
YFRVDDGLWQDRGTLLQLSSFALEAARRERYQRYQRNRLKDLPNLTFQIEVLLFEVGITNEEMLRELGAKASWLKIRVQN
KQLGIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPAENRSAM

Nucleotide


Download         Length: 627 bp        

>NTDB_id=886883 RRL13_RS07665 WP_182060340.1 1656889..1657515(+) (sxy/tfoX) [Enterobacter cloacae strain isolateB]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCAGAACTGGGTGATATTCATCACCGCGCACT
CTTTGGTGGCTATACCCTGGCGGTCGATAACGCCGTATTTGCCATGGTGTCTGATGGGGAACTCTATCTGCGCGCCTGTG
AGCAAAGCGCTACCTACTATGTGAAACACGCCTCCTCTTTTTTGACCCTTCTGAAACGGGGTCGGCCAGTGCTGCTTAAC
TACTTCCGGGTTGATGACGGGTTGTGGCAGGACAGGGGGACACTACTCCAGCTTTCCTCTTTTGCGCTTGAGGCGGCCAG
GCGGGAGCGATATCAGCGCTATCAGCGCAACCGGCTTAAAGACCTGCCCAATCTCACTTTCCAGATTGAGGTTCTGCTTT
TTGAAGTCGGGATCACCAACGAAGAAATGTTACGGGAACTGGGGGCAAAAGCGAGTTGGCTGAAAATCAGAGTTCAAAAT
AAACAACTTGGGATTAAAGTGCTTTTTGCGCTTGAAGGTGCAATAGAAGGGCTGCATGAAGCGGCGCTCCCGGCAGAGAT
TCGCCGGGAACTCACGGAATGGTTTAACGCGTTGCCAGAGCCTGCGGAGAATCGTTCCGCCATGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562