Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RRL17_RS15235 Genome accession   NZ_CP135494
Coordinates   3100725..3101351 (-) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain isolateC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095725..3106351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL17_RS15220 (RRL17_15220) helD 3095964..3098018 (-) 2055 WP_032619959.1 DNA helicase IV -
  RRL17_RS15225 (RRL17_15225) - 3098141..3098587 (+) 447 WP_003858149.1 YccF domain-containing protein -
  RRL17_RS15230 (RRL17_15230) yccS 3098606..3100768 (+) 2163 WP_015570895.1 YccS family putative transporter -
  RRL17_RS15235 (RRL17_15235) sxy/tfoX 3100725..3101351 (-) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  RRL17_RS15240 (RRL17_15240) sulA 3101569..3102078 (+) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  RRL17_RS15245 (RRL17_15245) ompA 3102435..3103487 (+) 1053 WP_017384806.1 porin OmpA -
  RRL17_RS15250 (RRL17_15250) matP 3103553..3104005 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  RRL17_RS15255 (RRL17_15255) - 3104192..3105952 (+) 1761 WP_017384808.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=886871 RRL17_RS15235 WP_017384804.1 3100725..3101351(-) (sxy/tfoX) [Enterobacter hormaechei strain isolateC]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=886871 RRL17_RS15235 WP_017384804.1 3100725..3101351(-) (sxy/tfoX) [Enterobacter hormaechei strain isolateC]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572