Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RRL09_RS15535 Genome accession   NZ_CP135475
Coordinates   3263992..3264618 (-) Length   208 a.a.
NCBI ID   WP_038985580.1    Uniprot ID   -
Organism   Enterobacter cloacae strain isolateF     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3258992..3269618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL09_RS15520 (RRL09_15520) helD 3259230..3261284 (-) 2055 WP_038985577.1 DNA helicase IV -
  RRL09_RS15525 (RRL09_15525) - 3261407..3261853 (+) 447 WP_013097253.1 YccF domain-containing protein -
  RRL09_RS15530 (RRL09_15530) yccS 3261873..3264035 (+) 2163 WP_014831317.1 YccS family putative transporter -
  RRL09_RS15535 (RRL09_15535) sxy/tfoX 3263992..3264618 (-) 627 WP_038985580.1 TfoX/Sxy family DNA transformation protein Regulator
  RRL09_RS15540 (RRL09_15540) sulA 3264836..3265345 (+) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  RRL09_RS15545 (RRL09_15545) ompA 3265700..3266755 (+) 1056 WP_028027914.1 porin OmpA -
  RRL09_RS15550 (RRL09_15550) matP 3266819..3267271 (-) 453 WP_013097258.1 macrodomain Ter protein MatP -
  RRL09_RS15555 (RRL09_15555) - 3267458..3269218 (+) 1761 WP_038985584.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24060.61 Da        Isoelectric Point: 9.3869

>NTDB_id=886802 RRL09_RS15535 WP_038985580.1 3263992..3264618(-) (sxy/tfoX) [Enterobacter cloacae strain isolateF]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYYVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=886802 RRL09_RS15535 WP_038985580.1 3263992..3264618(-) (sxy/tfoX) [Enterobacter cloacae strain isolateF]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTATGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTAAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAAGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562