Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RRL10_RS15340 Genome accession   NZ_CP135450
Coordinates   3135191..3135805 (-) Length   204 a.a.
NCBI ID   WP_315689468.1    Uniprot ID   -
Organism   Citrobacter freundii strain isolateL     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130191..3140805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL10_RS15325 (RRL10_15325) helD 3130415..3132469 (-) 2055 WP_313842872.1 DNA helicase IV -
  RRL10_RS15330 (RRL10_15330) - 3132595..3133041 (+) 447 WP_315689467.1 YccF domain-containing protein -
  RRL10_RS15335 (RRL10_15335) yccS 3133060..3135213 (+) 2154 WP_032941200.1 YccS family putative transporter -
  RRL10_RS15340 (RRL10_15340) sxy/tfoX 3135191..3135805 (-) 615 WP_315689468.1 TfoX/Sxy family DNA transformation protein Regulator
  RRL10_RS15345 (RRL10_15345) sulA 3136023..3136532 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  RRL10_RS15350 (RRL10_15350) ompA 3136890..3137948 (+) 1059 WP_003836839.1 porin OmpA -
  RRL10_RS15355 (RRL10_15355) matP 3138040..3138492 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  RRL10_RS15360 (RRL10_15360) - 3138678..3140438 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23257.64 Da        Isoelectric Point: 8.6049

>NTDB_id=886687 RRL10_RS15340 WP_315689468.1 3135191..3135805(-) (sxy/tfoX) [Citrobacter freundii strain isolateL]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEQGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=886687 RRL10_RS15340 WP_315689468.1 3135191..3135805(-) (sxy/tfoX) [Citrobacter freundii strain isolateL]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACAGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.118

100

0.691