Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RRV97_RS09280 Genome accession   NZ_CP135440
Coordinates   1989420..1990952 (-) Length   510 a.a.
NCBI ID   WP_315611358.1    Uniprot ID   A0AA96SGF9
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1984420..1995952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS09260 (RRV97_09260) - 1985133..1986053 (+) 921 WP_049333053.1 patatin-like phospholipase family protein -
  RRV97_RS09265 (RRV97_09265) - 1986162..1988018 (+) 1857 WP_315611356.1 ribonuclease catalytic domain-containing protein -
  RRV97_RS09270 (RRV97_09270) - 1988154..1988381 (+) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  RRV97_RS09275 (RRV97_09275) - 1988365..1989261 (+) 897 WP_315611357.1 farnesyl diphosphate synthase -
  RRV97_RS09280 (RRV97_09280) pilA 1989420..1990952 (-) 1533 WP_315611358.1 signal recognition particle-docking protein FtsY Machinery gene
  RRV97_RS09285 (RRV97_09285) msrAB 1991098..1992666 (+) 1569 WP_315611359.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  RRV97_RS09290 (RRV97_09290) purB 1993289..1994659 (-) 1371 WP_070837262.1 adenylosuccinate lyase -
  RRV97_RS09295 (RRV97_09295) - 1994870..1995310 (+) 441 WP_049323011.1 surface-adhesin E family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54745.80 Da        Isoelectric Point: 4.2499

>NTDB_id=886647 RRV97_RS09280 WP_315611358.1 1989420..1990952(-) (pilA) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHIESVVESAVETVSETVEQVRETLTETP
SETVEKVEEHVEAAKETAVETVSEAVEQVQETVAEMPSEAAEAVEEAAEQAEAAKETAIKTVSEAVEQVQETVAEMPSEV
AEAAEEAAGQAEAVKEEAVEAFSEAVEQVQETVAEKPVEAPAPVEEPKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=886647 RRV97_RS09280 WP_315611358.1 1989420..1990952(-) (pilA) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCGGAAAGCGTCAAAGGGCATA
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGTCAGCGAAACCGTCGAGCAGGTGCGGGAAACTTTGACCGAAACGCCG
TCTGAAACAGTCGAAAAAGTGGAAGAACACGTTGAAGCGGCAAAAGAAACGGCCGTTGAAACCGTCAGCGAGGCTGTTGA
ACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGCGGCTGAGGCTGTTGAGGAAGCAGCAGAACAGGCTGAGGCGG
CAAAAGAAACGGCTATTAAAACCGTCAGCGAAGCTGTTGAACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGTA
GCTGAGGCTGCTGAAGAAGCAGCAGGACAGGCCGAAGCAGTCAAAGAAGAAGCTGTTGAAGCATTTAGCGAAGCTGTCGA
GCAAGTTCAAGAAACCGTTGCGGAAAAACCGGTTGAAGCCCCTGCTCCGGTGGAAGAACCCAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCGCGTGACAAAATGGCGAAATCGCTGGCCGGCGTGTTCGGCGGCGGACAAATCGAC
GAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTTAAAGGCCTCAAAGACGGCAACGAATTGCGCGGCGCGCTGAAAGATGCGCTGTACGACT
TGATTAAGCCTCTGGAAAAACCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGC
GCAGGCAAAACCACATCTATCGGCAAATTGGCCAAATACTTCCAAGCGCAGGGCAAATCTGTGCTGTTGGCGGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAAGCTTGGGGCGAGCGCAACAATGTAACCGTGATTTCGCAAACCACAG
GCGATTCCGCAGCCGTTTGTTTCGATGCTGTCCAAGCCGCCAAAGCACGTGGCATAGACATTGTGCTTGCCGATACAGCC
GGCCGTCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGTCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCAT
TGGGTTTGACCGGCCTGATCGTCACCAAGCTAGACGGTACGGCCAAAGGCGGTATCCTTGCCGCCCTTGCCTCTGACCGC
CCAGTTCCTGTCCGCTATATCGGCGTAGGCGAAGGCATCGACGATTTACGTCCGTTTAATGCCAAAGCGTTTGTGGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

83.659

80.392

0.673