Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   RRV97_RS06595 Genome accession   NZ_CP135440
Coordinates   1408296..1411595 (-) Length   1099 a.a.
NCBI ID   WP_315611066.1    Uniprot ID   A0AA96NBM9
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1403296..1416595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS06575 (RRV97_06575) ilvE 1404941..1405939 (-) 999 WP_101755255.1 branched-chain-amino-acid transaminase -
  RRV97_RS06580 (RRV97_06580) - 1406153..1406476 (+) 324 WP_036490154.1 lipopolysaccharide assembly LapA domain-containing protein -
  RRV97_RS06585 (RRV97_06585) lapB 1406502..1407671 (+) 1170 WP_003684462.1 lipopolysaccharide assembly protein LapB -
  RRV97_RS06590 (RRV97_06590) - 1407786..1408292 (-) 507 WP_315611065.1 thioredoxin family protein -
  RRV97_RS06595 (RRV97_06595) recC 1408296..1411595 (-) 3300 WP_315611066.1 exodeoxyribonuclease V subunit gamma Machinery gene
  RRV97_RS06605 (RRV97_06605) - 1411927..1412808 (-) 882 WP_315611067.1 lysophospholipid acyltransferase family protein -
  RRV97_RS06610 (RRV97_06610) metK 1413201..1414370 (+) 1170 WP_049351011.1 methionine adenosyltransferase -
  RRV97_RS06615 (RRV97_06615) - 1414528..1415592 (+) 1065 WP_315611068.1 DUF1176 domain-containing protein -
  RRV97_RS06620 (RRV97_06620) - 1415717..1416037 (+) 321 WP_070823276.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 124969.77 Da        Isoelectric Point: 4.7134

>NTDB_id=886635 RRV97_RS06595 WP_315611066.1 1408296..1411595(-) (recC) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MFYLYQSDRLEALAEMCAHIHQALPLDAVLAQEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPECENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEESEAGAQPAWVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
AVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGHGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
KPANVEGWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELAEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPPVEAQPFFLEALS
QEEPGKTIQQGELISFWRNPVKVWLKRNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDTRRKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDAELIRSNKRPSEPYELHFDDLVLQGTIGNLYECGRIVFQNQKDNAPNRIARLLEHLIF
CAVAPQSVANRQTYIISLGQTETYAAIGQEAARALLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYSKKEDWDAVLRKAYE
IFNGNKMNKAQKEYTEVKLVFGHSNEAPLEEPLFENLVVNLLVPLLNNAAGKNNATEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=886635 RRV97_RS06595 WP_315611066.1 1408296..1411595(-) (recC) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGTTTTATCTTTATCAGTCTGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGGCCTTGCCTTTGGA
TGCGGTATTGGCGCAGGAAGAAGTAGTGGTGCAGAGCCAGGGGATGCGGCGGTATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCGGCCGGTCTGGCGTGGCAGCTAATGCGCAAATTGGTTCCCGATGTG
CCGCCGCTCAGCCCGTTTTCGCCTGAGGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAAGCGTTTCAGACGGC
CCCGGAATGCGAAAACGTGCGCTTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AAATGGCGGATATTTTCGACCAATATTTGGTGTACCGGCCGGATTGGATTGATGCGTGGCAGGCCGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCCGCGCCGCATCGCGTGGC
CTTGTGGGAAAAGCTGTTGGCGCAGTTGGATAAATCGGTCTTACCGCAAAGGTTGTTTGTATTCGGCATTTCGACAATGG
CACCGATGTATCTGCAACTGCTGCACCAAATTTCCAAGCATTGCGATGTTTTTGTGTTTGCGCTCAATCCGAGCAGCCAA
TATTGGGGCGAGGTCATCGACGAGGCGCAGATTTTGAAAAGGGGCGATGAGGCGGATTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGGCGTGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTGTTGCATTGCCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TACCAACAGGAAGAAAGCGAAGCAGGCGCGCAGCCGGCTTGGGTTCAAGTCCACGATGCGGACGGCAATCCGGTGTGTGT
CGAGCCGGACAAGCTGCTGAACGACGGCTCGGTCAAAATTGTTGCGGCGCACAGCCCTTTGCGCGAATTGCAGATTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAATAATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAG
CCCTACAGCCCATTTATCGAAGCTGTTTTTGGACAGGAGCAGGCCGGCAGCCAGGCTTTGCCGTATTCGATTTCGGATGT
AAAACTCAGCCGCCGCCAACCCTTGCTGTATGCTTTGGCGCAAACTTTGGATTTGCTGGAAAGCCGGTTTGAAGTGGACA
AGGTTTTACCTTTGCTGGAAAGCCGGTTGGTGCTGCAACGCTTCGGTTTGAGCGAGGAAGATGTGCCGCTGCTGCATGAG
GCTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGCAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCCGAAGGCGGCCACGGCATGTGGCAGGGCGTGAGCGCGTGGCATA
GCAACGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGCAA
AAACCTGCCAATGTGGAAGGCTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCACCGGATACGGACGACCA
ATACGCCAAGCAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATTACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGCTGGGTTTGAATGACGGCGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTCGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGTT
ATCTTTTCCTCGAAGCCTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTTGCGCCGTCTTCGTTAATCAGCGAGCTGCTGGATACTATTGCCGCCATGACGGGGAAAAGTGGGCGCGAGTTGGC
GGAGAAATGGGTGAAACATCATCCTTTGCAGGCGTTTTCACGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTACGCCGATGCGCTGAACCAACCGCCAGTAGAAGCGCAGCCGTTTTTCCTTGAGGCTTTAAGT
CAGGAAGAGCCGGGCAAAACCATTCAGCAGGGCGAGCTTATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGTTGAAGAG
AAATTTAAGCTGGGATCAGCCGTATTTGGACGGCGCATGGGAATCTGCCGAACCGTTTGAGCCGCAACATGAAGGCCGGA
TTGCCGATGCCTATTTGGATACGCGGCGCAAAGGGGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCAGAAAGCCTG
ATGCCGGTGGGCGAGTTGGGCGGCTTATGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTAGATGCCGAGTTGATACG
CAGCAACAAAAGGCCGTCTGAACCTTATGAATTACACTTTGACGACTTGGTTTTACAAGGCACCATCGGCAATCTTTACG
AATGCGGACGCATTGTGTTCCAAAACCAAAAAGACAATGCGCCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCGTCGCCCCTCAATCCGTTGCCAACCGACAAACCTATATCATCAGCCTGGGACAGACCGAAACCTATGCCGCCAT
CGGGCAAGAGGCGGCGAGGGCACTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGCCTTGCCGCTGCGGAGGAGTACAGCAAGAAAGAAGATTGGGATGCTGTCTTGAGAAAAGCCTATGAG
ATTTTTAACGGTAATAAAATGAACAAAGCGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGTCATTCGAACGAAGC
GCCGCTTGAAGAGCCGCTATTTGAAAACCTTGTCGTCAATCTGCTTGTTCCGCTTTTGAACAACGCGGCAGGGAAAAACA
ATGCAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(806-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

65.028

98.089

0.638