Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RRV97_RS05845 Genome accession   NZ_CP135440
Coordinates   1247179..1247637 (+) Length   152 a.a.
NCBI ID   WP_315610987.1    Uniprot ID   -
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242179..1252637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS05820 (RRV97_05820) - 1242276..1242944 (-) 669 WP_070584289.1 DUF3108 domain-containing protein -
  RRV97_RS05825 (RRV97_05825) purN 1242975..1243601 (-) 627 WP_315610985.1 phosphoribosylglycinamide formyltransferase -
  RRV97_RS05830 (RRV97_05830) - 1243699..1244517 (-) 819 WP_003745836.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RRV97_RS05835 (RRV97_05835) - 1244678..1245943 (-) 1266 WP_049331560.1 Glu/Leu/Phe/Val family dehydrogenase -
  RRV97_RS05840 (RRV97_05840) - 1246365..1247078 (+) 714 WP_315610986.1 phosphoglycolate phosphatase -
  RRV97_RS05845 (RRV97_05845) recX 1247179..1247637 (+) 459 WP_315610987.1 recombination regulator RecX Regulator
  RRV97_RS05850 (RRV97_05850) - 1247713..1247874 (+) 162 WP_003745829.1 hypothetical protein -
  RRV97_RS05855 (RRV97_05855) - 1247985..1250141 (-) 2157 WP_315610988.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RRV97_RS05860 (RRV97_05860) rpoZ 1250248..1250454 (-) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  RRV97_RS05865 (RRV97_05865) gmk 1250508..1251125 (-) 618 WP_003745825.1 guanylate kinase -
  RRV97_RS05870 (RRV97_05870) - 1251294..1251854 (+) 561 WP_003745823.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17787.01 Da        Isoelectric Point: 7.1702

>NTDB_id=886633 RRV97_RS05845 WP_315610987.1 1247179..1247637(+) (recX) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCRELLPDREDELQTAISVLRKKFKQEAEDLKEKQKQARFLAYRGFSADTIQTALKTAWNEEDFYQ

Nucleotide


Download         Length: 459 bp        

>NTDB_id=886633 RRV97_RS05845 WP_315610987.1 1247179..1247637(+) (recX) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAAACCTCCCAAAACCTTACGTGCCCGCGCCTTGGATATTCTTTCCCGTCAAGAAGTCAGCCGCGTCGGTTTGAAACG
CAAACTGGCTCCGCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCTGAGCGAAATTGGCAATCCG
ACCAACGTTACGCTGAAGCCTATATTCACAGCAAGAGTAACCGTTACGGCACGCTCCGCCTCAAACAAGCCTTGGCTCAA
CAAGGTATTGATGCGGATGACTGTCGGGAATTACTGCCCGACAGGGAGGACGAGCTGCAAACCGCCATTTCTGTTTTGCG
TAAAAAATTCAAGCAAGAAGCTGAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCGTATCGCGGCTTTAGTG
CAGACACTATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

79.592

96.711

0.77