Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RRV97_RS05795 Genome accession   NZ_CP135440
Coordinates   1234180..1236219 (-) Length   679 a.a.
NCBI ID   WP_315610984.1    Uniprot ID   -
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229180..1241219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS05780 (RRV97_05780) - 1230073..1231512 (+) 1440 WP_315610983.1 transferrin-binding protein-like solute binding protein -
  RRV97_RS05785 (RRV97_05785) - 1231573..1232367 (-) 795 WP_070713092.1 thymidylate synthase -
  RRV97_RS05790 (RRV97_05790) gdhA 1232781..1234115 (+) 1335 WP_003745850.1 NADP-specific glutamate dehydrogenase -
  RRV97_RS05795 (RRV97_05795) recG 1234180..1236219 (-) 2040 WP_315610984.1 ATP-dependent DNA helicase RecG Machinery gene
  RRV97_RS05800 (RRV97_05800) - 1236469..1239513 (-) 3045 WP_315612237.1 TonB-dependent siderophore receptor -
  RRV97_RS05805 (RRV97_05805) secB 1239776..1240210 (-) 435 WP_003745844.1 protein-export chaperone SecB -
  RRV97_RS05810 (RRV97_05810) grxC 1240232..1240489 (-) 258 WP_003684090.1 glutaredoxin 3 -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75046.87 Da        Isoelectric Point: 6.9758

>NTDB_id=886632 RRV97_RS05795 WP_315610984.1 1234180..1236219(-) (recG) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDITPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAA
ALGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLDLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMADFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPMLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=886632 RRV97_RS05795 WP_315610984.1 1234180..1236219(-) (recG) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCTAAGAAGCTAGAGAAACTCAACCTCCATACCGC
ATGGGATTTGGTTTTGCATTTGCCGCTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGACGCGCCTATCGGCG
TGCCGTGTCAGGTCGAGGGCGAGGTCATCCATCAGGAAGTCACGTTTAAACCGCGCAAGCAGTTGATTGTCCAAATCGCC
GACGGTTCCGGCAGTGTCCTTTTTTTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAGCG
CATCCGCGCCGTGGGCGAAATCAAGCACGGGTTTCACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGAGCA
GCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGTATTATTCAG
ACAGCCTTGGACATTACGCCGTTGCACGACACCTTGCCTGATGCTTTATTAGGCCGTCTGAAACTGCCACACCTTGCCGA
AAGCCTGCGCCTTTTGCACTCGCCGCCGCCGAGTTTCACCATCCATCAACTTTCAGACGGCGCGCTGCCTGCATGGCAGC
GGCTCAAATTCGACGAACTTTTGGCGCAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGTGTCAGCGGCACGGCAGCG
GCATTGGGCGGAGATGGCACATTGACCCAAGCCCTGCGCCACGCTTTGCCGTTTGCCCTGACCGATGCACAAGAAAGAGT
CGTGTCCGAAATCCGCCGCGACATGGCGCAAACCCATCCTATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTTGCTGCTTTGTCTGCTTTGACGGCTATTGAATCCGGTGCGCAGGTGGCTGTAATGGCGCCGACTGAAATCCTT
GCCGAACAGCATTTCATCAAGTTCAAACAATGGCTTGAGCCGTTGGACCTTGAAGTCGTCTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCACCGTCAAAATCGCCGTCGGCACGCACGCCCTGTTTT
CAGACGACGTCGAGTTTCAAAATCTGGGCTTGGTGATTGTGGACGAACAACATCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACACCTATCCCGCGCACGCTCGCCATGAGTTTCTT
TGCCGACTTGGACGTATCCGTCATCGACGAATTGCCACCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTAGCCCAGCTTCAGGCAGCCTTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAGGCCGCTGAAAAAGCCGAAGTCATGGCGGATTTTGCCGCAGGCCGTCTGAACGTCTTGG
TCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTACACCAATTACGCGGGAGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGAACC
TTTAAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ATATCCGCGGTCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTCCCTATGCTGCGCTTCGCTAACCTCGAAGAAGAC
CTGCACCTCTTGGAACAAGCGCGCGAAATCGCGCCCATGTTAATCGAACAAAACCCTGAAATCGTCGAAGCGCATCTGGC
AAGGTGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

DEAD/DEAH box helicase (DEAD)

(261-418)

RecG wedge domain (RecG_wedge)

(14-163)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.667

100

0.937