Detailed information NTG0088663

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABK04_RS21915
• Genome accession: NZ_AP027648
• Coordinates: 4526503..4527528 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PSJ-36
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4521503..4532528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK04_RS21905 (VEE37_41960)	rpmE	4523734..4523946 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABK04_RS21910 (VEE37_41970)	priA	4524149..4526347 (+)	2199	WP_001325632.1	primosomal protein N'	Machinery gene
AABK04_RS21915 (VEE37_41980)	cytR	4526503..4527528 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABK04_RS21920 (VEE37_41990)	ftsN	4527620..4528579 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABK04_RS21925 (VEE37_42000)	hslV	4528672..4529202 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABK04_RS21930 (VEE37_42010)	hslU	4529212..4530543 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABK04_RS21935 (VEE37_42020)	menA	4530610..4531536 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABK04_RS21940 (VEE37_42030)	rraA	4531629..4532114 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABK04_RS21945 (VEE37_42040)	zapB	4532199..4532444 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=88663 AABK04_RS21915 WP_000644904.1 4526503..4527528(+) (cytR) [Escherichia coli strain PSJ-36]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=88663 AABK04_RS21915 WP_000644904.1 4526503..4527528(+) (cytR) [Escherichia coli strain PSJ-36]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628