Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   RRV97_RS03995 Genome accession   NZ_CP135440
Coordinates   869027..870790 (-) Length   587 a.a.
NCBI ID   WP_315612049.1    Uniprot ID   A0AA96NE33
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 864027..875790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS03975 (RRV97_03975) tilS 864649..865983 (-) 1335 WP_315612046.1 tRNA lysidine(34) synthetase TilS -
  RRV97_RS03980 (RRV97_03980) - 866072..867031 (-) 960 WP_315612047.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  RRV97_RS03985 (RRV97_03985) - 867235..867636 (+) 402 WP_003679090.1 RNA-binding S4 domain-containing protein -
  RRV97_RS03990 (RRV97_03990) - 867731..868930 (-) 1200 WP_315612048.1 hypothetical protein -
  RRV97_RS03995 (RRV97_03995) recD 869027..870790 (-) 1764 WP_315612049.1 exodeoxyribonuclease V subunit alpha Machinery gene
  RRV97_RS04000 (RRV97_04000) lolD 870923..871606 (-) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RRV97_RS04005 (RRV97_04005) - 871599..872849 (-) 1251 WP_315612050.1 lipoprotein-releasing ABC transporter permease subunit -
  RRV97_RS04010 (RRV97_04010) - 873064..873351 (+) 288 WP_003683377.1 hypothetical protein -
  RRV97_RS04015 (RRV97_04015) recR 873414..874019 (-) 606 WP_070814021.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64806.98 Da        Isoelectric Point: 5.7835

>NTDB_id=886625 RRV97_RS03995 WP_315612049.1 869027..870790(-) (recD) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPLILQGRKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDPKDSKEQRNAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPNIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEHPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPNHGFEIKERPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTEGEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALSDALERQFEQPDMQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=886625 RRV97_RS03995 WP_315612049.1 869027..870790(-) (recD) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAACCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGCGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTCGATGCCTTAAGCAATTTGCCGAATTTGGTCGGCAATGCGGATAAACCGCTTATCCTGCAAGGCCGGAAATTGTTT
TTAGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTCGAAATCAAACGGCTGGCAAGTGCCGAGGCAGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATCCTAAAGACAGCAAAGAGCAACGGAATGCTGCGGCTTTGG
CCTTGCTACAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGTAAGACCACGACCGTCGCAAAGCTTTTGGGTCTG
ATTTGCAATAACAGTACGAAGCTGCCCCGTATTGCGTTGGCTGCGCCGACGGGCAAGGCGGCTGCACATATGGCACGGGC
TTTGCAGCGTGCTTTGGATGGCTTTGATTTGTCTCCGAACATTAAAGCGCATTTGGAAAACTTGGAAGGACAGACTGTCC
ATCGATTGTTGAAATTGCGGCCACCGCAAATGCGTCCTGCGTTCAATCATGAACATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTGTTGGATTTATTGCGTGCCGTGCCGACCGGTTGTCGTCTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGATTGGGTGCCGTATTGGCGGCATTGTCGCGTCCGACGGCTTTGGATA
AAGAAACCGCTGAAAAGCTGGAAGTTTATCTGCCCAATCATGGCTTTGAGATTAAAGAGCGGCCTCAAGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGCGCAGACAGCGGTATCGGTTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAGTTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TCGCCTTGCTGTATCAAAAGCAACAGGATTATTGGCAGGCCGTGGCAGAGAATAATGTTGCACTCGCCTACGGTCATGCG
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATATCTGCAACGGCA
AGGCAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACCCACAATGATTATATGCTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCCTATTTTCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCACAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCGCCGTCAGTGCCTGCAACGACGGAGGGCGAAGAGGAAGCCAGAGGTTTGGATAAGG
CTTTGCTTTACACAGCCATTACCCGCGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCAGAGGAATTGTGTCAGGCTGTG
GGATGCCACCAAAAACGCAGGACGGCATTGTCCGATGCCTTGGAGCGGCAGTTTGAACAGCCTGATATGCAGGCTTCTGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_19)

(127-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

59.099

98.296

0.581