Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   RRV97_RS01730 Genome accession   NZ_CP135440
Coordinates   358219..359364 (+) Length   381 a.a.
NCBI ID   WP_315611773.1    Uniprot ID   A0AA96NCZ0
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 353219..364364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS01700 (RRV97_01700) rsmA 353812..354591 (+) 780 WP_036490462.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  RRV97_RS01705 (RRV97_01705) - 354607..355272 (+) 666 WP_296116202.1 sel1 repeat family protein -
  RRV97_RS01710 (RRV97_01710) - 355275..356003 (+) 729 WP_003747231.1 amino acid ABC transporter ATP-binding protein -
  RRV97_RS01715 (RRV97_01715) - 356067..356426 (+) 360 WP_049322913.1 hypothetical protein -
  RRV97_RS01720 (RRV97_01720) - 356431..356883 (+) 453 WP_315611772.1 protein YgfX -
  RRV97_RS01725 (RRV97_01725) folC 356922..358205 (+) 1284 WP_315115375.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  RRV97_RS01730 (RRV97_01730) tpc 358219..359364 (+) 1146 WP_315611773.1 cell division protein FtsN Machinery gene
  RRV97_RS01735 (RRV97_01735) - 359357..359860 (+) 504 WP_315611774.1 CvpA family protein -
  RRV97_RS01740 (RRV97_01740) purF 360014..361558 (+) 1545 WP_315611775.1 amidophosphoribosyltransferase -
  RRV97_RS01745 (RRV97_01745) greB 361633..362124 (+) 492 WP_315611776.1 transcription elongation factor GreB -
  RRV97_RS01750 (RRV97_01750) plsY 362211..362822 (-) 612 WP_049322922.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RRV97_RS01755 (RRV97_01755) folB 362880..363230 (+) 351 WP_315611777.1 dihydroneopterin aldolase -
  RRV97_RS01760 (RRV97_01760) - 363305..363841 (+) 537 WP_315095040.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41659.58 Da        Isoelectric Point: 9.8424

>NTDB_id=886619 RRV97_RS01730 WP_315611773.1 358219..359364(+) (tpc) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MSDNKQKETPNGYDLDGYEQLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQSQVKTADEPSKAVVLE
PNKEDVAAAEEAARHADAEAQSKPQNAGDEEDNAPVEVLKPSRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAARKAQAQQEADEKENALAAKKRALQARAEKAEREAAAERNKLAQLEKAEKAIAERKS
AKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKPETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEKE
RAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=886619 RRV97_RS01730 WP_315611773.1 358219..359364(+) (tpc) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGTCCGACAACAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACAACTCAAACGTCGCAACCGCCG
TCGCTTGGTCTTGGCCTCCGGCTTGGTGGTGGCTTCGGGTATGCTGTTCGGTCTGGCGCTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCGCCTGTCGGTCAGAGCCAAGTCAAAACGGCTGACGAGCCGAGCAAGGCCGTTGTTTTAGAG
CCGAATAAAGAGGATGTCGCTGCTGCTGAAGAAGCAGCCCGCCATGCGGATGCCGAAGCGCAAAGCAAACCTCAAAATGC
CGGCGATGAAGAAGACAATGCGCCGGTCGAAGTGCTGAAGCCGAGCCGTGAATCCGCTCCCGAAGATGTCGGCGAGCCGT
TGGTTTTGATTAACGATACTTTGGATGACGGCAATATTAAAGGTTTGGAAGAGTCCGAGCGTATTCAACGCGCCGAGGCC
GCCAAACGCGAAGCTGCCGAACGCCGAGCCGAAGAACGCCGCCAACGTCAGGCAGAACAACGAGCTGCGGCACGCAAGGC
ACAAGCCCAACAGGAAGCGGATGAAAAAGAAAACGCATTGGCCGCTAAAAAACGCGCACTTCAAGCGCGTGCTGAAAAAG
CAGAGCGTGAAGCCGCTGCCGAGCGCAATAAATTGGCTCAATTGGAAAAGGCAGAGAAAGCCATTGCCGAGCGTAAATCT
GCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAACCTGCCAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAAAAA
TGAAAAGGCTAAACCGGAAACAGCCAAAGCTGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAGCCA
AACCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAACCTGCGAAAAAAGCTGCTATTCAGGCAGGTTATGCTGAAAAAGAA
CGCGCGCAGAGCCTGCAACGTAAAATGAAAGCGGCAGGTATCGATTCGACCATTACTGAAGTCATGACCGATAAAGGTAA
GGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCAGAGCGCGATTTGAACAAATTGCGTGTACATGGCA
TTGCCGGTCAGGTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(308-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.235

100

0.507