Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   RRU94_RS21405 Genome accession   NZ_CP135439
Coordinates   2604270..2604452 (+) Length   60 a.a.
NCBI ID   WP_242232378.1    Uniprot ID   -
Organism   Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 2599270..2609452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU94_RS21375 (RRU94_21370) trpS 2599493..2600482 (+) 990 WP_315692891.1 tryptophan--tRNA ligase -
  RRU94_RS21380 (RRU94_21375) - 2600513..2601259 (-) 747 WP_315692892.1 DUF3603 family protein -
  RRU94_RS21385 (RRU94_21380) - 2601316..2601504 (-) 189 WP_242232374.1 hypothetical protein -
  RRU94_RS21390 (RRU94_21385) fabF 2601582..2602823 (-) 1242 WP_315692893.1 beta-ketoacyl-ACP synthase II -
  RRU94_RS21395 (RRU94_21390) - 2602851..2603783 (-) 933 WP_315692894.1 beta-ketoacyl-ACP synthase III -
  RRU94_RS21400 (RRU94_21395) - 2603929..2604111 (-) 183 WP_315692895.1 YjzD family protein -
  RRU94_RS21405 (RRU94_21400) comZ 2604270..2604452 (+) 183 WP_242232378.1 ComZ family protein Regulator
  RRU94_RS21410 (RRU94_21405) clpB 2604673..2607255 (-) 2583 WP_315692896.1 ATP-dependent chaperone ClpB -
  RRU94_RS21415 (RRU94_21410) - 2607504..2608196 (+) 693 WP_315692897.1 Crp/Fnr family transcriptional regulator -
  RRU94_RS21420 (RRU94_21415) - 2608456..2608764 (-) 309 WP_315692898.1 metal-sulfur cluster assembly factor -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6998.22 Da        Isoelectric Point: 4.1941

>NTDB_id=886607 RRU94_RS21405 WP_242232378.1 2604270..2604452(+) (comZ) [Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016]
MEKNMEFMQIAMKYLPEAQQKMQEAGIEFSPAMAEPFFGLFMKVMQEAYDLGKKEALLEE

Nucleotide


Download         Length: 183 bp        

>NTDB_id=886607 RRU94_RS21405 WP_242232378.1 2604270..2604452(+) (comZ) [Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016]
ATGGAAAAAAATATGGAATTTATGCAAATCGCAATGAAATACCTGCCGGAAGCCCAGCAGAAAATGCAGGAAGCCGGCAT
TGAGTTTTCACCTGCAATGGCAGAGCCGTTTTTTGGCTTGTTTATGAAAGTCATGCAGGAAGCTTACGATCTTGGTAAAA
AAGAAGCCTTGCTCGAAGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(2-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

56.364

91.667

0.517