Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RRU92_RS06985 Genome accession   NZ_CP135436
Coordinates   1449774..1450583 (+) Length   269 a.a.
NCBI ID   WP_315639097.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1450619..1451875 1449774..1450583 flank 36


Gene organization within MGE regions


Location: 1449774..1451875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS06985 (RRU92_06985) vicX 1449774..1450583 (+) 810 WP_315639097.1 MBL fold metallo-hydrolase Regulator
  RRU92_RS06990 (RRU92_06990) - 1450619..1451875 (-) 1257 WP_315639098.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29946.89 Da        Isoelectric Point: 5.9877

>NTDB_id=886554 RRU92_RS06985 WP_315639097.1 1449774..1450583(+) (vicX) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MSDIGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITSLLSEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKIDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFQVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=886554 RRU92_RS06985 WP_315639097.1 1449774..1450583(+) (vicX) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAGTGATATCGGTTTTAAATACAGTATTTTAGCATCGGGGTCCAGTGGAAATTCATTTTACTTGGAAACACCAAAAAA
GAAAATTTTAGTAGATGCAGGACTATCTGGTAAAAAAATTACAAGCCTATTGAGTGAAATCAATCGTAAACCAGAGGATT
TGGATGCTATCTTGATTACGCATGAGCATTCAGACCATATCCACGGCGTGGGCGTTCTGGCTCGTAAGTACGGCATGGAT
CTTTATGCTAATGAGAAGACCTGGCAGGCTATGGAAAATAGTAAGTATCTCGGTAAGATTGACTCGTCTCAAAAGCATAT
TTTCGAGATGGGAAAAACTAAAACCTTTGGCGACATCGATATCGAAAGTTTCGGTGTGAGTCATGATGCAGTAGCGCCCC
AGTTTTATCGTTTTATGAAGGATGATAAGAGTTTTGTCATGCTGACGGATACGGGCTATGTTAGTGATCGCATGGCTGGC
ATTGTCGAGAATGCAGATGGCTATCTGATCGAGTCAAATCATGATGTGGAAATCCTGCGAGCAGGATCTTACGCATGGCG
ACTCAAACAACGCATCCTGTCTGACCTTGGTCACCTCTCAAACGAGGATGGAGCAGACGCCATGATTCGTACACTAGGTA
ATCGTACCAAGAAGATTTACCTAGGCCATTTGTCCAAGGAAAATAATATCAAAGAGCTGGCTCACATGACCATGGTCAAT
CAGTTAGCTCAAGCAGATCTGGGAGTAGGAGTAGACTTTCAAGTTTACGATACTTCACCAGATACTGCAACACCATTGAC
TGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77