Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   RRU92_RS04590 Genome accession   NZ_CP135436
Coordinates   933593..934642 (+) Length   349 a.a.
NCBI ID   WP_315640792.1    Uniprot ID   A0AA96MTQ2
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 928593..939642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS04560 (RRU92_04560) - 929342..929974 (+) 633 WP_315640782.1 DJ-1/PfpI family protein -
  RRU92_RS04565 (RRU92_04565) dnaJ 930129..931265 (+) 1137 WP_049530135.1 molecular chaperone DnaJ -
  RRU92_RS04570 (RRU92_04570) - 931351..932004 (-) 654 WP_315640785.1 hypothetical protein -
  RRU92_RS04575 (RRU92_04575) - 932090..932377 (-) 288 WP_315640786.1 hypothetical protein -
  RRU92_RS04580 (RRU92_04580) - 932387..932797 (-) 411 WP_315640788.1 HIT family protein -
  RRU92_RS04585 (RRU92_04585) pptA 932865..933596 (+) 732 WP_315640790.1 ABC transporter ATP-binding protein Regulator
  RRU92_RS04590 (RRU92_04590) pptB 933593..934642 (+) 1050 WP_315640792.1 ABC transporter permease Regulator
  RRU92_RS04595 (RRU92_04595) - 934950..935279 (-) 330 WP_315640793.1 helicase BlpT -
  RRU92_RS04600 (RRU92_04600) - 935556..935894 (+) 339 WP_248034717.1 LytTR family DNA-binding domain-containing protein -
  RRU92_RS04605 (RRU92_04605) comE/blpR 935899..936636 (+) 738 WP_315640794.1 LytTR family DNA-binding domain-containing protein Regulator
  RRU92_RS04610 (RRU92_04610) - 936650..937990 (+) 1341 WP_315640795.1 sensor histidine kinase -
  RRU92_RS04615 (RRU92_04615) blpC 938270..938428 (-) 159 WP_248034714.1 quorum-sensing system pheromone BlpC -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40300.40 Da        Isoelectric Point: 10.0304

>NTDB_id=886536 RRU92_RS04590 WP_315640792.1 933593..934642(+) (pptB) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKDLFLKRKQAFRKECVGYLRYVFNDHFVLFLLVLVGFLAYQYSQLLQHFPENHLPILCLIGIVSVLLLLWGGIATYVEA
PDKLFLLVAEEEVREHIQKQNLVSFIFWVSVQTLFLLLFAPLFLAMGLGLVVFGVYVLLLGVVKYFLFQKKAGKFFSANH
LDWDYVIAQESKRKQFLLRFFALFTQVKGISNSVKRRAYLDVILKAVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLFLS
LLALIFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQAVVRGLTGFVLLVQLVVGLITLQE
KLALLALLGAGLVLQILYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=886536 RRU92_RS04590 WP_315640792.1 933593..934642(+) (pptB) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAAGACTTGTTTCTAAAGCGAAAGCAGGCTTTTCGTAAAGAATGTGTCGGTTATCTGCGCTATGTGTTCAATGACCA
CTTTGTCCTGTTTTTACTGGTCTTGGTAGGTTTTCTAGCCTATCAGTATAGTCAACTGCTCCAGCATTTTCCTGAGAATC
ACTTACCAATCCTATGTTTAATTGGAATTGTCTCTGTTTTACTCTTGCTTTGGGGAGGGATAGCGACTTATGTGGAAGCT
CCTGATAAGCTCTTTCTCTTAGTAGCTGAAGAAGAAGTGAGAGAACATATCCAAAAGCAAAACCTAGTTTCCTTCATCTT
TTGGGTTAGTGTACAGACTCTCTTCTTGCTTCTTTTTGCCCCTCTATTTTTAGCCATGGGCTTGGGCTTAGTGGTTTTTG
GTGTTTATGTTCTTCTTTTGGGAGTCGTGAAATATTTCCTATTTCAGAAAAAAGCTGGCAAGTTTTTTAGTGCAAATCAT
CTGGACTGGGACTATGTGATTGCCCAAGAAAGTAAACGAAAGCAGTTCTTGCTTCGCTTCTTTGCCCTCTTTACCCAAGT
TAAGGGAATTTCAAACAGCGTCAAGCGACGAGCTTATCTAGATGTTATCCTAAAAGCAGTTCAGAAGGTACCGAGCAAGA
TTTGGCAGAACCTTTATCTTCGTTCTTATCTGCGAAATGGAGACCTCTTTGCCCTCAGTCTTCGTCTCCTCTTCCTATCT
TTGCTGGCGTTGATCTTTATCGAGCAAGCTTGGATAGCGACAGCAGTAGTAGTTTTATTTAACTATCTCTTGCTCTTTCA
GTTATTGGCCCTCTATCATGCTTTTGACTACCAATATTTGACCCAACTTTTCCCGCTAGACAAGGGGCAAAAGGAAAAAG
GGTTACAGGCGGTTGTCCGAGGATTGACTGGTTTTGTTTTATTGGTTCAACTGGTAGTTGGGTTGATTACCCTCCAAGAA
AAACTAGCCCTTCTAGCCCTCCTTGGAGCTGGACTGGTCTTGCAAATCTTGTATCTCCCATATCAGGTGAAACGTCAGAT
GCAGGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

48.286

100

0.484

  pptB Streptococcus thermophilus LMD-9

47.714

100

0.479