Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RRU92_RS03860 Genome accession   NZ_CP135436
Coordinates   758732..759439 (-) Length   235 a.a.
NCBI ID   WP_315640490.1    Uniprot ID   A0AA96MP65
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 756891..757851 758732..759439 flank 881


Gene organization within MGE regions


Location: 756891..759439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS03855 (RRU92_03855) - 758258..758668 (-) 411 WP_248034832.1 hypothetical protein -
  RRU92_RS03860 (RRU92_03860) treR 758732..759439 (-) 708 WP_315640490.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27613.83 Da        Isoelectric Point: 6.8906

>NTDB_id=886531 RRU92_RS03860 WP_315640490.1 758732..759439(-) (treR) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKKYQQLYKQIEKAIHEETYAVGDFLPSEHELMDQYQVSRDTVRKALALLQEEGLIKKIRGQGSQVIKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKTSLLTGFPEFRMVWKVVRQRVVDDLVSVLDIDYLDMELIPKLTREIAEQSIY
SYIENDLKLIIDYAQKEITIDHSNDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=886531 RRU92_RS03860 WP_315640490.1 758732..759439(-) (treR) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
GTGAAAAAATATCAACAATTATACAAACAAATAGAAAAAGCAATTCATGAAGAAACCTATGCTGTTGGAGATTTTCTCCC
TAGTGAACACGAACTCATGGACCAGTATCAGGTGAGTCGTGACACTGTTCGAAAAGCCTTAGCTCTCCTCCAAGAAGAGG
GATTGATTAAAAAAATCAGAGGGCAGGGTTCTCAGGTTATTAAAGAAGAAACTGTGAATTTCCCAGTGTCTAACCTAACT
AGCTACCAAGAATTGGTCCAAGAGTTAGGACTTCGCTCAAAAACGAATGTCGTGAGTCTAGATAAAATTATCATCGATAA
AAAAACTTCCCTGTTAACTGGCTTCCCAGAATTTCGGATGGTTTGGAAGGTCGTTCGCCAACGAGTTGTAGATGATCTGG
TATCCGTACTGGATATTGATTATCTAGATATGGAACTCATCCCTAAACTAACCAGAGAAATTGCTGAACAATCTATCTAC
TCCTATATCGAAAATGATTTGAAATTAATCATCGACTATGCTCAAAAGGAAATCACCATTGACCATAGTAACGATAGAGA
TAAGATTCTCATGGATATTGGTAAAGATCCTTATGTTGTTTCCATTAAGTCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTCACCGAAAGCCGGCACAAACTTGAAAAGTTTCGATTTGTAGATTTTGCTAAAAGAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.829

99.574

0.596