Detailed information NTG0886505

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RRU92_RS01315
• Genome accession: NZ_CP135436
• Coordinates: 278294..280726 (-)
• Length: 810 a.a.
• NCBI ID: WP_315640077.1
• Uniprot ID: -
• Organism: Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 273294..285726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RRU92_RS01290 (RRU92_01290)	-	273998..274690 (-)	693	WP_315640070.1	hypothetical protein	-
RRU92_RS01295 (RRU92_01295)	-	274972..275202 (+)	231	WP_315640071.1	hypothetical protein	-
RRU92_RS01300 (RRU92_01300)	-	275425..276198 (-)	774	WP_315640072.1	NUDIX hydrolase	-
RRU92_RS01305 (RRU92_01305)	pnuC	276200..276976 (-)	777	WP_315640073.1	nicotinamide riboside transporter PnuC	-
RRU92_RS01310 (RRU92_01310)	-	276986..278044 (-)	1059	WP_315640074.1	AAA family ATPase	-
RRU92_RS01315 (RRU92_01315)	clpC	278294..280726 (-)	2433	WP_315640077.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RRU92_RS01320 (RRU92_01320)	-	280733..281191 (-)	459	WP_315640078.1	CtsR family transcriptional regulator	-
RRU92_RS01325 (RRU92_01325)	-	281658..281867 (+)	210	WP_001044018.1	CPCC family cysteine-rich protein	-
RRU92_RS01330 (RRU92_01330)	-	281902..282102 (+)	201	WP_315640079.1	hypothetical protein	-
RRU92_RS01335 (RRU92_01335)	-	282385..282687 (-)	303	WP_315640081.1	hypothetical protein	-
RRU92_RS01340 (RRU92_01340)	-	282715..282954 (-)	240	WP_315640082.1	hypothetical protein	-
RRU92_RS01345 (RRU92_01345)	-	282991..283203 (-)	213	WP_315640083.1	hypothetical protein	-
RRU92_RS01350 (RRU92_01350)	-	283553..284281 (-)	729	WP_315640085.1	ABC transporter ATP-binding protein	-
RRU92_RS01355 (RRU92_01355)	-	284281..285288 (-)	1008	WP_315640087.1	ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 90227.27 Da
• Isoelectric Point: 6.2311

>NTDB_id=886505 RRU92_RS01315 WP_315640077.1 278294..280726(-) (clpC) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKYSKALRECIESAFLVASHFGAEYLESWHLLIAMANHGYSVAGATLNEFPYEIDRLEEVAVELTETKYSDQEHYQELPF
SHRLKVLLLEAEHVASVVHAKVLGTEHLLYAILHDGNALATRILEKAGFSYEDQKDQVKIAGLRRSLEARAGWTREDLKA
LRQRHRTVADKQNSMANMMGMPQTPSGGLEDYTHDLTEQARSGKLEPVIGRDQEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIANGDVPDEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGKVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVMIEEPSLADSMAILQGLKATYEKHHHVQITDDAVET
AVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKSKHAKQDESGLTPADKALMDGKWKQAAQLIAKEQEVPVYKDLVTESDI
LTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQEQAVSSISRAIRRNQSGIRNNKRPIGSFMFLGPTGVGKTELAK
ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDD
GVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRMFEELKKAYRPEFINRIDEKVVFHSLSS
QDMQEVVKIMVKPLIASLAEKGIDLKLQASALKLLAQQGYDPEMGARPLRRTLQTEVEDKLAELLLKGELEAGKTLKIGV
KAGQLKFEIV

Nucleotide

• Length: 2433 bp

>NTDB_id=886505 RRU92_RS01315 WP_315640077.1 278294..280726(-) (clpC) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAATATTCAAAAGCATTGAGAGAATGTATAGAAAGTGCCTTTCTGGTCGCCAGTCATTTTGGGGCAGAATACCTAGA
GTCATGGCATCTATTGATTGCTATGGCCAATCATGGTTACAGTGTAGCTGGGGCGACTTTAAATGAATTTCCATATGAGA
TTGATCGTCTGGAGGAAGTTGCTGTAGAGCTAACTGAAACAAAGTATAGCGATCAGGAACATTATCAGGAGCTTCCTTTT
TCACACCGGTTGAAGGTATTGTTGTTGGAAGCAGAGCATGTTGCATCTGTCGTACATGCCAAGGTATTGGGAACAGAGCA
CCTTCTTTATGCTATCTTACATGATGGCAATGCCTTAGCTACTCGCATTTTAGAAAAAGCGGGATTTTCTTACGAAGATC
AGAAGGATCAGGTCAAGATTGCTGGACTTCGTCGAAGTCTTGAAGCGCGTGCTGGTTGGACTAGAGAAGATTTGAAGGCC
CTTCGCCAGCGTCATCGTACGGTAGCGGATAAGCAAAATTCCATGGCTAATATGATGGGGATGCCTCAGACACCAAGTGG
AGGTTTGGAAGATTATACGCATGATCTTACGGAGCAAGCTCGTTCGGGTAAATTGGAACCAGTCATCGGGCGCGACCAAG
AAATCTCTCGTATGATTCAAATCTTGAGCCGTAAGACAAAAAATAATCCGGTCTTAGTTGGAGATGCAGGTGTCGGTAAA
ACAGCTCTAGCACTTGGTCTTGCGCAACGTATTGCCAACGGGGATGTACCTGATGAAATGGCTAAGATGCGTGTCCTAGA
ACTTGATTTGATGAATGTGGTTGCGGGAACTCGTTTCCGTGGTGACTTTGAAGAACGTATGAACAATATCATCAAAGATA
TTGAGGAAGATGGCAAGGTCATTCTCTTTATCGATGAGCTTCATACCATTATGGGATCAGGAAGTGGGATTGATTCGACC
TTGGATGCAGCCAATATCTTGAAACCTGCCTTGGCACGTGGAACTCTGAGAACTGTCGGTGCGACCACTCAGGAAGAGTA
TCAAAAGCACATCGAAAAAGACGCAGCCCTTTCTCGTCGCTTTGCAAAAGTGATGATTGAGGAGCCGAGTTTAGCAGATA
GTATGGCTATTTTGCAGGGCTTGAAAGCAACTTACGAGAAACACCACCATGTCCAAATTACAGACGATGCAGTAGAAACA
GCTGTCAAAATGGCACATCGTTATTTGACGAGTCGTCATTTGCCAGACTCAGCCATTGATCTATTGGACGAAGCAGCTGC
AACAGTGCAAAATAAATCGAAACACGCTAAACAAGATGAGTCAGGTTTAACACCAGCTGATAAGGCCTTGATGGATGGTA
AATGGAAGCAAGCTGCTCAACTCATTGCAAAAGAGCAGGAAGTTCCAGTCTATAAAGATTTGGTGACAGAATCAGACATT
TTGACCACCTTGAGTCGCTTGTCAGGTATTCCTGTGCAAAAATTAACCCAAACGGATGCCAAGAAGTATCTCAACCTTGA
AGCTGAACTGCATAAACGTGTTATCGGACAGGAACAAGCGGTGTCTAGCATCAGTCGTGCCATTCGCCGAAATCAATCGG
GTATTCGCAATAACAAACGTCCAATTGGATCCTTTATGTTCCTAGGACCAACAGGTGTTGGTAAGACCGAGTTGGCCAAG
GCCTTGGCGGAAGTTCTCTTTGATGATGAATCTGCTCTTATCCGCTTTGACATGAGTGAATACATGGAGAAATTCGCGGC
CAGTCGTCTCAATGGGGCTCCTCCAGGTTATGTAGGTTACGAAGAAGGTGGAGAGTTGACCGAGAAGGTTCGTAACAAAC
CGTACTCAGTACTTCTCTTTGACGAGGTAGAAAAGGCTCATCCAGACATCTTTAATGTTCTCTTGCAGGTCTTGGATGAT
GGTGTCTTGACAGACAGTAAGGGTCGCAAGGTTGACTTCTCCAATACCATCATCATCATGACATCAAACCTTGGTGCGAC
AGCTCTTCGTGACGACAAGACAGTCGGCTTTGGAGCTAAGGACATTCGTTTTGACCAAGAAAATATGGAAAAACGGATGT
TTGAGGAGTTGAAAAAGGCTTATCGTCCAGAGTTTATCAACCGTATTGATGAGAAGGTGGTCTTCCATAGCTTGTCAAGT
CAAGATATGCAAGAAGTAGTTAAGATTATGGTCAAACCATTGATTGCAAGCTTAGCAGAAAAAGGAATTGACTTGAAACT
CCAAGCATCTGCCCTTAAACTTCTAGCTCAGCAAGGCTATGATCCAGAGATGGGGGCTCGTCCACTACGCAGAACTTTGC
AAACGGAAGTAGAAGACAAACTTGCAGAACTTCTCCTTAAAGGTGAATTGGAAGCTGGTAAGACTCTGAAGATTGGTGTC
AAAGCTGGTCAATTAAAATTTGAGATTGTTTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (231-364)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (103-137)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-60)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (718-798)

• AAA lid domain (AAA_lid_9) (371-441)

• AAA domain (Cdc48 subfamily) (AAA_2) (540-711)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae D39	92.831	99.877	0.927
clpC	Streptococcus pneumoniae TIGR4	92.831	99.877	0.927
clpC	Streptococcus pneumoniae Rx1	92.831	99.877	0.927
clpC	Streptococcus mutans UA159	67.651	100	0.679
clpC	Streptococcus thermophilus LMD-9	66.38	100	0.668
clpC	Streptococcus thermophilus LMG 18311	66.258	100	0.667
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	50.06	100	0.514
clpC	Bacillus subtilis subsp. subtilis str. 168	45.51	100	0.457
clpE	Streptococcus mutans UA159	48.387	76.543	0.37