Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RRV45_RS15615 Genome accession   NZ_CP135435
Coordinates   3112947..3113699 (-) Length   250 a.a.
NCBI ID   WP_315669052.1    Uniprot ID   A0AA96N1R5
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3107947..3118699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS15600 (RRV45_15600) - 3108507..3109139 (-) 633 WP_315665615.1 helix-turn-helix transcriptional regulator -
  RRV45_RS15605 (RRV45_15605) glyS 3109399..3111471 (-) 2073 WP_315665616.1 glycine--tRNA ligase subunit beta -
  RRV45_RS15610 (RRV45_15610) glyQ 3111464..3112354 (-) 891 WP_315665617.1 glycine--tRNA ligase subunit alpha -
  RRV45_RS15615 (RRV45_15615) recO 3112947..3113699 (-) 753 WP_315669052.1 DNA repair protein RecO Machinery gene
  RRV45_RS15620 (RRV45_15620) - 3113730..3113873 (-) 144 WP_315665618.1 YqzL family protein -
  RRV45_RS15625 (RRV45_15625) era 3114065..3114979 (-) 915 WP_315665619.1 GTPase Era -
  RRV45_RS15630 (RRV45_15630) - 3114972..3115370 (-) 399 WP_315665620.1 cytidine deaminase -
  RRV45_RS15635 (RRV45_15635) - 3115659..3116039 (-) 381 WP_315665621.1 diacylglycerol kinase family protein -
  RRV45_RS15640 (RRV45_15640) ybeY 3116017..3116487 (-) 471 WP_315665622.1 rRNA maturation RNase YbeY -
  RRV45_RS15645 (RRV45_15645) - 3116484..3118676 (-) 2193 WP_315665623.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28494.02 Da        Isoelectric Point: 8.5516

>NTDB_id=886478 RRV45_RS15615 WP_315669052.1 3112947..3113699(-) (recO) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MLEKCEGIIIRTTNYGETNKIVTLYTREWGKIGVMARGAKKPSSRLAAVTQPFTYGYFLVQRSSGLGSLQQGEMITSMRS
IREDIFLTAYASYIVDLTDKGTDDRKPNPYLFELVFQALNLVNEGFDAEIIVNIFEMKMLNSLGLYPVLNQCTVCSSADG
HFSFSIREGGLICHRCLEKDPYHFKISPATVKLLRLFYFFDLSRLGNISVKPETKAELKKVINAYYDEYSGLNLKTKRFL
NQMAKFEDML

Nucleotide


Download         Length: 753 bp        

>NTDB_id=886478 RRV45_RS15615 WP_315669052.1 3112947..3113699(-) (recO) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
GTGCTTGAAAAATGTGAGGGCATCATTATTAGAACAACAAATTATGGTGAAACAAACAAAATTGTAACTTTATACACCCG
GGAATGGGGTAAGATTGGTGTGATGGCACGTGGAGCAAAAAAGCCGAGCAGCCGGCTCGCTGCTGTCACCCAACCTTTTA
CATACGGCTATTTTTTAGTTCAAAGAAGCAGTGGATTAGGAAGTCTGCAACAAGGTGAAATGATTACTTCTATGCGCTCT
ATCCGCGAAGATATTTTCCTAACAGCATATGCAAGCTATATTGTTGATCTAACAGATAAAGGAACTGACGACAGAAAGCC
CAATCCTTATTTATTTGAATTAGTTTTTCAAGCTTTAAACTTAGTCAATGAAGGTTTTGATGCAGAAATTATTGTGAATA
TCTTCGAAATGAAAATGTTGAATTCGTTAGGATTGTATCCAGTTTTAAACCAGTGTACCGTATGCAGCAGTGCAGATGGC
CATTTTTCTTTTTCAATAAGAGAGGGTGGACTCATTTGCCACCGATGCCTGGAAAAAGATCCATATCATTTTAAAATTTC
TCCAGCAACAGTGAAGCTATTACGGCTTTTTTATTTTTTTGATTTATCTCGCCTTGGTAATATTTCTGTTAAACCGGAAA
CGAAGGCTGAGCTTAAAAAAGTCATTAATGCTTATTATGATGAATACTCTGGGCTTAATTTAAAAACGAAAAGGTTTCTA
AATCAAATGGCTAAATTTGAGGATATGCTTTAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

66

100

0.66