Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RRV45_RS13835 Genome accession   NZ_CP135435
Coordinates   2795916..2796527 (+) Length   203 a.a.
NCBI ID   WP_315665275.1    Uniprot ID   A0AA96MQU3
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2790916..2801527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS13805 (RRV45_13805) - 2791480..2792343 (-) 864 WP_315665269.1 ABC transporter permease subunit -
  RRV45_RS13810 (RRV45_13810) - 2792480..2793064 (-) 585 WP_315665270.1 YppG family protein -
  RRV45_RS13815 (RRV45_13815) - 2793359..2793541 (+) 183 WP_315665271.1 YppF family protein -
  RRV45_RS13820 (RRV45_13820) - 2793646..2794029 (-) 384 WP_315665272.1 YppE family protein -
  RRV45_RS13825 (RRV45_13825) - 2794133..2794414 (-) 282 WP_315665273.1 hypothetical protein -
  RRV45_RS13830 (RRV45_13830) - 2794808..2795800 (-) 993 WP_315665274.1 DUF2515 domain-containing protein -
  RRV45_RS13835 (RRV45_13835) recU 2795916..2796527 (+) 612 WP_315665275.1 Holliday junction resolvase RecU Machinery gene
  RRV45_RS13840 (RRV45_13840) - 2796571..2799126 (+) 2556 WP_315665276.1 PBP1A family penicillin-binding protein -
  RRV45_RS13845 (RRV45_13845) - 2799182..2799706 (-) 525 WP_315665277.1 YpoC family protein -
  RRV45_RS13850 (RRV45_13850) nth 2799703..2800359 (-) 657 WP_315665278.1 endonuclease III -
  RRV45_RS13855 (RRV45_13855) - 2800390..2801097 (-) 708 WP_315665279.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23756.32 Da        Isoelectric Point: 9.4071

>NTDB_id=886473 RRV45_RS13835 WP_315665275.1 2795916..2796527(+) (recU) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MNFHYPNGKKFLPVKKKSMDINKEKKWSYSNRGMTLEEDINETNEYYLANGIASIHKKPTPVQIVQVDYPKRSAAVIKEA
YFKQASTTDYNGVYKGRYIDFEAKETKNLTSFPLKNFHDHQIVHMETILKQDGICFVLLRFSSTEDIFLLEAEHLLMFWK
RMKDGGRKSITKDEIEALGHQIPLGYNPRIDYIKKIDYLYSLG

Nucleotide


Download         Length: 612 bp        

>NTDB_id=886473 RRV45_RS13835 WP_315665275.1 2795916..2796527(+) (recU) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGAACTTCCATTATCCGAACGGCAAGAAATTTCTACCGGTAAAAAAGAAATCCATGGATATCAATAAAGAAAAAAAATG
GTCCTACAGCAACCGTGGTATGACTTTGGAGGAAGATATAAATGAAACGAATGAGTATTATTTAGCGAATGGCATTGCTT
CCATTCATAAAAAGCCTACACCTGTGCAAATCGTCCAGGTGGATTACCCGAAAAGAAGTGCGGCGGTCATAAAAGAAGCG
TATTTTAAACAAGCTTCAACAACAGATTACAATGGAGTATACAAAGGCAGGTATATTGATTTTGAGGCAAAGGAAACAAA
AAATCTAACTTCCTTTCCATTAAAAAATTTCCATGACCATCAAATTGTGCATATGGAAACAATTCTGAAGCAAGATGGAA
TCTGCTTCGTTCTATTAAGGTTTTCTTCAACAGAGGACATATTTCTGCTTGAGGCAGAGCATTTACTTATGTTTTGGAAA
AGGATGAAGGATGGCGGCAGAAAATCTATTACTAAGGATGAAATAGAAGCGCTTGGCCACCAAATCCCATTAGGATATAA
CCCTAGAATTGACTATATTAAAAAAATCGATTATCTTTATAGCCTCGGATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

66.327

96.552

0.64