Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RRV45_RS05100 Genome accession   NZ_CP135435
Coordinates   1021978..1022301 (-) Length   107 a.a.
NCBI ID   WP_315667689.1    Uniprot ID   A0AA96MY78
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016978..1027301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS05075 (RRV45_05075) sipW 1017517..1018098 (+) 582 WP_315667684.1 signal peptidase I SipW -
  RRV45_RS05080 (RRV45_05080) - 1018192..1018839 (+) 648 WP_315667685.1 TasA family protein -
  RRV45_RS05085 (RRV45_05085) - 1018930..1019826 (+) 897 WP_315667686.1 TasA family protein -
  RRV45_RS05090 (RRV45_05090) - 1019915..1020784 (+) 870 WP_315667687.1 LPXTG cell wall anchor domain-containing protein -
  RRV45_RS22085 - 1020843..1021151 (+) 309 WP_410489334.1 DUF5658 family protein -
  RRV45_RS05095 (RRV45_05095) - 1021566..1021718 (+) 153 WP_315667688.1 anti-repressor SinI family protein -
  RRV45_RS05100 (RRV45_05100) sinR 1021978..1022301 (-) 324 WP_315667689.1 helix-turn-helix domain-containing protein Regulator
  RRV45_RS05105 (RRV45_05105) mnmH 1022485..1023543 (-) 1059 WP_315667690.1 tRNA 2-selenouridine(34) synthase MnmH -
  RRV45_RS05110 (RRV45_05110) - 1023664..1023891 (-) 228 WP_315667691.1 DUF1128 domain-containing protein -
  RRV45_RS05115 (RRV45_05115) - 1024219..1024689 (+) 471 WP_315667693.1 low molecular weight protein-tyrosine-phosphatase -
  RRV45_RS05120 (RRV45_05120) - 1024709..1025065 (+) 357 WP_315667694.1 YtxH domain-containing protein -
  RRV45_RS05125 (RRV45_05125) - 1025087..1025911 (+) 825 WP_315667695.1 YihY/virulence factor BrkB family protein -
  RRV45_RS05130 (RRV45_05130) - 1026215..1026568 (-) 354 WP_315667696.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RRV45_RS05135 (RRV45_05135) - 1026552..1026824 (-) 273 WP_315667697.1 hypothetical protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12394.08 Da        Isoelectric Point: 5.2070

>NTDB_id=886457 RRV45_RS05100 WP_315667689.1 1021978..1022301(-) (sinR) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MIGDRVKLLRKEKKMSLSELAEQAGVAKSYLSSLERNLQTNPSIQFLEKIAAVLHVPVDHLIHEQPNTDELDSDWVDIVQ
EAMNSGVSKEQFREFLEFNKWRIDQNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=886457 RRV45_RS05100 WP_315667689.1 1021978..1022301(-) (sinR) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGATCGGTGATCGCGTAAAATTACTTCGTAAAGAAAAGAAAATGTCGTTATCCGAGCTTGCCGAACAAGCTGGTGTGGC
CAAGTCTTACTTAAGTTCACTAGAAAGAAACCTGCAAACCAATCCTTCCATACAATTTCTTGAAAAAATCGCAGCTGTCC
TTCATGTTCCGGTTGATCATTTAATTCATGAACAGCCGAATACAGATGAATTGGATTCGGATTGGGTCGATATCGTTCAA
GAAGCGATGAATTCAGGTGTTTCGAAAGAACAATTCCGGGAATTTCTCGAATTTAATAAATGGAGAATTGATCAGAATAA
ATAG

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-98)

Helix-turn-helix (HTH_3)

(7-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

65.741

100

0.664