Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RRV45_RS01890 Genome accession   NZ_CP135435
Coordinates   343806..344756 (+) Length   316 a.a.
NCBI ID   WP_315667059.1    Uniprot ID   A0AA96MWD9
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338806..349756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS01885 (RRV45_01885) - 343055..343468 (-) 414 WP_315667058.1 hypothetical protein -
  RRV45_RS01890 (RRV45_01890) ceuB 343806..344756 (+) 951 WP_315667059.1 ABC transporter permease Machinery gene
  RRV45_RS01895 (RRV45_01895) - 344749..345699 (+) 951 WP_315667060.1 iron chelate uptake ABC transporter family permease subunit -
  RRV45_RS01900 (RRV45_01900) - 345696..346457 (+) 762 WP_315667061.1 ABC transporter ATP-binding protein -
  RRV45_RS01905 (RRV45_01905) - 346476..347447 (+) 972 WP_315667062.1 siderophore ABC transporter substrate-binding protein -
  RRV45_RS01910 (RRV45_01910) - 347447..347755 (+) 309 WP_315667063.1 antibiotic biosynthesis monooxygenase -
  RRV45_RS01915 (RRV45_01915) - 347987..348418 (+) 432 WP_315667064.1 DUF4275 family protein -
  RRV45_RS01920 (RRV45_01920) - 348599..348997 (+) 399 WP_315668906.1 VanZ family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34864.14 Da        Isoelectric Point: 10.2712

>NTDB_id=886453 RRV45_RS01890 WP_315667059.1 343806..344756(+) (ceuB) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MKKRYLIASLIVLSILSLFVGVSHITPKDLLNLQSDETQIFLISRLPRLLAILFAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASLLEKMVVAFVFALAGTLLFMQLLDRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMIMKGRYELLYITIPLLVVAYLFANRFTVAGMGEDFSKNLGLSYKRVVNFGLILVALITVTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGSSFLLVCDILGRVIIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=886453 RRV45_RS01890 WP_315667059.1 343806..344756(+) (ceuB) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGAAAAAAAGATACCTTATCGCCTCGCTCATTGTTCTATCAATCCTATCCCTTTTCGTTGGTGTGAGCCATATAACACC
GAAGGATTTGCTGAATCTGCAATCTGATGAAACTCAAATTTTTCTCATCAGCCGCTTGCCAAGATTATTGGCAATCTTAT
TTGCAGGAGCAGGGATGAGTATTGCAGGGCTAATCATGCAGCAGCTCAGCCGGAATAAATTCGTTTCACCAACAACAGCG
GGTACACTCGATGCTACTAGACTTGGAATTCTAGTGTCAATGCTGTTATTTGCGAATGCGTCTCTTCTTGAAAAAATGGT
CGTTGCCTTTGTATTTGCGCTCGCCGGCACGCTTTTGTTTATGCAATTGCTTGACCGAATTAAATTTAAGGACGCAATTT
TTATTCCGCTTGTTGGTTTAATGTTTGGAAACATCTTATCTTCGATTACGACCTTTTTTGCCTATCGGGCAGATGTCATC
CAAAATATGTCTGCATGGCTCCAGGGTGATTTTTCAATGATAATGAAGGGACGATATGAGCTTTTATACATAACGATTCC
ATTGTTAGTAGTGGCCTATCTATTTGCGAATCGCTTTACAGTCGCAGGTATGGGGGAAGATTTTTCGAAAAACTTAGGTT
TGTCCTATAAACGAGTTGTGAATTTTGGACTTATTCTTGTAGCACTAATAACCGTTACGGTTGTTCTAACAGTTGGAATG
ATTCCATTTCTTGGCTTAATTATCCCAAACATTGTTTCAATTTTTAAAGGGGATCATTTGCAAAAGACCTTACCGCATAC
CGCATTACTTGGCTCATCCTTTTTGCTTGTGTGTGATATATTGGGACGGGTTATTATTTACCCTTATGAGATTTCGATTA
GCTTGATGGTAGGAGTCATTGGCAGCGGAATCTTCCTCTACTTACTATTTAGGAGGAAGGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

99.051

0.532