Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RRV45_RS00220 Genome accession   NZ_CP135435
Coordinates   43636..43920 (-) Length   94 a.a.
NCBI ID   WP_066301993.1    Uniprot ID   A0AA96MXV3
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 38636..48920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS00185 (RRV45_00185) - 38988..39317 (+) 330 WP_315666798.1 cyclic-di-AMP receptor -
  RRV45_RS00190 (RRV45_00190) holB 39355..40362 (+) 1008 WP_315666799.1 DNA polymerase III subunit delta' -
  RRV45_RS00195 (RRV45_00195) - 40355..41182 (+) 828 WP_066302014.1 stage 0 sporulation family protein -
  RRV45_RS00200 (RRV45_00200) yabA 41196..41570 (+) 375 WP_315666800.1 DNA replication initiation control protein YabA -
  RRV45_RS00205 (RRV45_00205) - 41712..42452 (+) 741 WP_315666801.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RRV45_RS00210 (RRV45_00210) - 42442..42726 (+) 285 WP_315666802.1 GIY-YIG nuclease family protein -
  RRV45_RS00215 (RRV45_00215) rsmI 42704..43597 (+) 894 WP_315666803.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RRV45_RS00220 (RRV45_00220) abrB 43636..43920 (-) 285 WP_066301993.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RRV45_RS00225 (RRV45_00225) metG 44769..46721 (+) 1953 WP_315666804.1 methionine--tRNA ligase -
  RRV45_RS00230 (RRV45_00230) - 47034..47801 (+) 768 WP_315666805.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10684.41 Da        Isoelectric Point: 4.9008

>NTDB_id=886449 RRV45_RS00220 WP_066301993.1 43636..43920(-) (abrB) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MKSTGIVRKVDELGRVVIPIELRRTLDIAEKDALEIYVDDDRIILKKYKPNMTCLVTGEVSDDNIQLANGKLIVSREGAE
QLLSEIQNRFELVK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=886449 RRV45_RS00220 WP_066301993.1 43636..43920(-) (abrB) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGAAATCTACAGGTATTGTTCGTAAAGTTGATGAACTTGGTCGCGTGGTTATTCCTATCGAGTTAAGACGTACATTGGA
TATTGCTGAAAAGGATGCTCTAGAAATCTACGTAGATGATGATCGTATTATCCTTAAAAAGTACAAGCCAAATATGACTT
GCCTAGTAACTGGGGAAGTTTCTGACGATAACATCCAATTAGCTAATGGAAAATTAATTGTTAGCCGCGAAGGTGCAGAA
CAATTATTAAGTGAAATTCAAAACAGATTTGAACTTGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

81.915

100

0.819