Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RRV45_RS00020 Genome accession   NZ_CP135435
Coordinates   3156..4274 (+) Length   372 a.a.
NCBI ID   WP_315666780.1    Uniprot ID   A0AA96MWV1
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS00005 (RRV45_00005) dnaA 1..1347 (+) 1347 WP_315666777.1 chromosomal replication initiator protein DnaA -
  RRV45_RS00010 (RRV45_00010) dnaN 1523..2659 (+) 1137 WP_315666778.1 DNA polymerase III subunit beta -
  RRV45_RS00015 (RRV45_00015) yaaA 2898..3107 (+) 210 WP_315666779.1 S4 domain-containing protein YaaA -
  RRV45_RS00020 (RRV45_00020) recF 3156..4274 (+) 1119 WP_315666780.1 DNA replication/repair protein RecF Machinery gene
  RRV45_RS00025 (RRV45_00025) remB 4284..4523 (+) 240 WP_315666781.1 extracellular matrix regulator RemB -
  RRV45_RS00030 (RRV45_00030) gyrB 4635..6557 (+) 1923 WP_315666782.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 42933.33 Da        Isoelectric Point: 8.5897

>NTDB_id=886447 RRV45_RS00020 WP_315666780.1 3156..4274(+) (recF) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MYIEQLLLKNYRNYEGLEVQFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKELIRWDQEYAKIEGRVQKNNGS
LPMQLVISKKGKKAKCNHIEQQKLSQYVGNMNVVMFAPEDLHLVKGSPQVRRRFIDMEIGQVSPIYLHDVSQYQKILQQR
NHYLKQLQIKKQTDQTMLDILTEQFIQTAVKIVKKRFEFLQLLENWAKPIHEGISRGLESLKIEYKPSADVSDEQDLSKM
IKVYEDKFGKIKNREIERGVTMFGPHRDDLLFFVNGRDVQTFGSQGQQRTTALSVKLAEIELIHSEIGEYPLLLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIDHQTLKEAAAFKVEAGSMKKIQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=886447 RRV45_RS00020 WP_315666780.1 3156..4274(+) (recF) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGTATATCGAGCAATTGCTATTAAAAAATTACCGGAACTATGAAGGATTAGAGGTCCAGTTTGAAAACAAGGTGAATGT
CATTTTGGGTGAGAATGCTCAGGGAAAAACAAACGTCATGGAATCGATTTATGTATTAGCCATGGCAAAATCGCATCGTA
CCTCAAATGATAAAGAACTTATTCGCTGGGACCAAGAGTATGCTAAAATAGAAGGCAGGGTCCAAAAAAACAATGGATCT
TTGCCCATGCAGTTAGTCATCTCTAAAAAGGGAAAAAAGGCTAAATGCAACCATATTGAACAGCAAAAATTAAGTCAATA
TGTTGGAAATATGAATGTTGTCATGTTTGCTCCCGAAGATTTACATCTTGTAAAGGGCAGTCCACAAGTAAGACGGCGTT
TTATCGACATGGAAATTGGGCAAGTCTCTCCCATTTATCTTCATGATGTTAGCCAGTATCAAAAAATACTGCAGCAAAGA
AACCATTATTTAAAGCAGCTCCAAATAAAAAAACAAACGGATCAAACGATGTTAGACATCCTAACTGAGCAGTTTATCCA
AACCGCCGTCAAAATCGTTAAAAAGCGCTTCGAATTTCTGCAGCTGCTTGAAAATTGGGCAAAGCCGATTCATGAAGGCA
TATCAAGAGGGCTTGAATCATTGAAAATAGAGTACAAGCCATCGGCAGATGTATCAGATGAGCAAGATTTGTCGAAAATG
ATAAAAGTATATGAAGATAAATTTGGAAAAATAAAAAATAGAGAGATTGAACGTGGTGTTACGATGTTCGGTCCTCATCG
AGATGATCTGCTCTTTTTTGTAAATGGGCGCGATGTACAAACCTTTGGCTCACAAGGGCAGCAGAGAACAACAGCTTTAT
CAGTTAAGCTGGCAGAAATTGAGCTTATTCATTCTGAGATTGGCGAATATCCACTATTGCTTCTTGATGACGTACTTTCA
GAACTTGATGATTATCGTCAATCACATTTACTAAATACGATTCAAGGAAAGGTACAAACCTTTGTCACAACGACAAGTGT
TGATGGAATCGATCATCAGACTTTAAAAGAGGCAGCTGCTTTCAAGGTGGAAGCCGGAAGTATGAAAAAGATTCAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

74.054

99.462

0.737