Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RRP28_RS08620 Genome accession   NZ_CP135285
Coordinates   1902859..1903536 (+) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. actinidiae strain Yunnan2.4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897859..1908536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRP28_RS08610 (RRP28_08610) tssI 1898295..1900322 (-) 2028 WP_017684000.1 type VI secretion system tip protein VgrG -
  RRP28_RS08615 (RRP28_08615) comA 1900560..1902776 (+) 2217 WP_017683999.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RRP28_RS08620 (RRP28_08620) exbB 1902859..1903536 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RRP28_RS08625 (RRP28_08625) - 1903533..1903964 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  RRP28_RS08630 (RRP28_08630) lpxK 1903964..1904959 (+) 996 WP_003381114.1 tetraacyldisaccharide 4'-kinase -
  RRP28_RS08635 (RRP28_08635) - 1904977..1905162 (+) 186 WP_003381112.1 Trm112 family protein -
  RRP28_RS08640 (RRP28_08640) kdsB 1905159..1905923 (+) 765 WP_003381111.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RRP28_RS08645 (RRP28_08645) murB 1905958..1906977 (+) 1020 WP_003381110.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=886430 RRP28_RS08620 WP_003381119.1 1902859..1903536(+) (exbB) [Pseudomonas syringae pv. actinidiae strain Yunnan2.4]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=886430 RRP28_RS08620 WP_003381119.1 1902859..1903536(+) (exbB) [Pseudomonas syringae pv. actinidiae strain Yunnan2.4]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGACTCGCCGCTGGGCGAAATCCTCGCCGCTGGCCTGGCCAAT
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAACGCTACCT
GAGCGCGCTGGGCTCTATCGCAGCAATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACTGCG
TCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAGGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCA
AATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738