Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RQP59_RS20975 Genome accession   NZ_CP135253
Coordinates   4295837..4297270 (+) Length   477 a.a.
NCBI ID   WP_080328330.1    Uniprot ID   A0AA96M508
Organism   Enterobacter chuandaensis strain FAHZZU5885     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4290837..4302270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP59_RS20945 (RQP59_20915) - 4291404..4292381 (+) 978 WP_080328325.1 calcium/sodium antiporter -
  RQP59_RS20950 (RQP59_20920) kdsD 4292395..4293381 (+) 987 WP_028014567.1 arabinose-5-phosphate isomerase KdsD -
  RQP59_RS20955 (RQP59_20925) kdsC 4293396..4293962 (+) 567 WP_080328326.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  RQP59_RS20960 (RQP59_20930) lptC 4293959..4294534 (+) 576 WP_080328327.1 LPS export ABC transporter periplasmic protein LptC -
  RQP59_RS20965 (RQP59_20935) lptA 4294503..4295057 (+) 555 WP_080328328.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  RQP59_RS20970 (RQP59_20940) lptB 4295064..4295789 (+) 726 WP_080328329.1 LPS export ABC transporter ATP-binding protein -
  RQP59_RS20975 (RQP59_20945) rpoN/rpoN1 4295837..4297270 (+) 1434 WP_080328330.1 RNA polymerase factor sigma-54 Machinery gene
  RQP59_RS20980 (RQP59_20950) hpf 4297293..4297580 (+) 288 WP_014171818.1 ribosome hibernation promoting factor -
  RQP59_RS20985 (RQP59_20955) ptsN 4297663..4298154 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RQP59_RS20990 (RQP59_20960) rapZ 4298200..4299054 (+) 855 WP_008501442.1 RNase adapter RapZ -
  RQP59_RS20995 (RQP59_20965) npr 4299051..4299323 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  RQP59_RS21000 (RQP59_20970) mtgA 4299362..4300087 (-) 726 WP_265194970.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  RQP59_RS21005 (RQP59_20975) elbB 4300084..4300737 (-) 654 WP_080328332.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54224.03 Da        Isoelectric Point: 4.3198

>NTDB_id=886313 RQP59_RS20975 WP_080328330.1 4295837..4297270(+) (rpoN/rpoN1) [Enterobacter chuandaensis strain FAHZZU5885]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLEEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWIVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=886313 RQP59_RS20975 WP_080328330.1 4295837..4297270(+) (rpoN/rpoN1) [Enterobacter chuandaensis strain FAHZZU5885]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCCATTCGTCTGCTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCCCTGCTGGAGCAAGCCGATCTTCATG
ATGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCAGATGCACTCGAACAAAAAGAGATGCCGGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTATACCGCTGGCACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGTTACCGGTCTATCAGGGCGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTAGAGCTTACCCCCTTCT
CCGATACCGACCGCGCGATCGCCACGTCGATTGTCGACGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAC
ATTCTGGAAAGCATGGGCGACGAAGAGATTGAGCTTGAAGAAATTGAAGCCGTTCTTAAGCGTATACAGCGTTTTGATCC
AGTCGGCGTGGCCGCGAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTTG
AGGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTTCTCGCCAACCACGATTTCCGCTCTCTGATGCGCGTTACGCGT
TTGAAAGAAGAGGTGCTGAAAGAGGCAGTGAATCTGATCCAGTCACTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAGTACGTGATCCCGGACGTGCTGGTCAGAAAACACAATGACCGCTGGATCGTTGAACTGAACTCTGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGCAACGATTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGTTGATCAAGAGTCTGGAGAGCCGAAATGATACCCTGCTCCGCGTGAGCCGCTGCAT
CGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCCACGATTTCCCGCGTCACGACGCAGAAGTATCTGCACAGTCCGCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAATACCGAGGGTGGCGGCGAAGCCTCCTCAACGGCGATTCGTGCCCTGGTGAAGAAGTT
AATCGCCGCGGAGAACCCCGCGAAGCCACTAAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482