Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RNT40_RS26530 Genome accession   NZ_CP135236
Coordinates   5738184..5738582 (-) Length   132 a.a.
NCBI ID   WP_016447937.1    Uniprot ID   A0AAX3SQK3
Organism   Delftia tsuruhatensis strain HA60     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5733184..5743582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT40_RS26515 (RNT40_26515) - 5735005..5737257 (-) 2253 WP_016447934.1 methyl-accepting chemotaxis protein -
  RNT40_RS26520 (RNT40_26520) - 5737276..5737803 (-) 528 WP_016447935.1 chemotaxis protein CheW -
  RNT40_RS26525 (RNT40_26525) - 5737819..5738184 (-) 366 WP_016447936.1 PleD family two-component system response regulator -
  RNT40_RS26530 (RNT40_26530) pilG 5738184..5738582 (-) 399 WP_016447937.1 PleD family two-component system response regulator Regulator
  RNT40_RS26535 (RNT40_26535) - 5738630..5738782 (-) 153 WP_017406135.1 rubredoxin -
  RNT40_RS26540 (RNT40_26540) - 5738898..5739857 (+) 960 WP_016453190.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RNT40_RS26545 (RNT40_26545) hemL 5739932..5741248 (+) 1317 WP_407080946.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RNT40_RS26550 (RNT40_26550) - 5741299..5741898 (-) 600 WP_126312474.1 DNA-3-methyladenine glycosylase I -
  RNT40_RS26555 (RNT40_26555) - 5741901..5742377 (-) 477 WP_016447941.1 c-type cytochrome -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14600.85 Da        Isoelectric Point: 6.9242

>NTDB_id=886261 RNT40_RS26530 WP_016447937.1 5738184..5738582(-) (pilG) [Delftia tsuruhatensis strain HA60]
MTTSGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
DTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVEQFGKQTIGAL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=886261 RNT40_RS26530 WP_016447937.1 5738184..5738582(-) (pilG) [Delftia tsuruhatensis strain HA60]
GTGACGACATCGGGCGCACCCTTGCGCGTACTCGTGGTGGATGACAGCAATACCATCCGCCGCAGCGCAGAAATCTTCCT
CAAGCAGGGCGGGCACGAAGTGCTCCTGGCCGACGACGGCTTCGACGCACTGTCCAAGGTCAACGACTACCAGCCCCAGC
TGATCTTCTGCGACATCCTCATGCCCAAGCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCGCGCTTTGCT
GACACGCCTGTGGTCATGCTCTCGTCCAAGGACGGCGTATTCGACAAGGCGCGCGGGCGCATGGTGGGCTGCCAGGACTA
CCTCACGAAACCCTTCACCAAAGACCAGCTGCTGCAGGCCGTGGAGCAGTTCGGCAAGCAAACCATAGGAGCACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.772

86.364

0.508