Detailed information NTG0886260

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RNT40_RS25350
• Genome accession: NZ_CP135236
• Coordinates: 5501292..5502512 (+)
• Length: 406 a.a.
• NCBI ID: WP_047326032.1
• Uniprot ID: -
• Organism: Delftia tsuruhatensis strain HA60
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5496292..5507512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RNT40_RS25330 (RNT40_25330)	coaD	5497062..5497562 (-)	501	WP_016449072.1	pantetheine-phosphate adenylyltransferase	-
RNT40_RS25335 (RNT40_25335)	rsmD	5497693..5498400 (-)	708	WP_016449073.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RNT40_RS25340 (RNT40_25340)	-	5498397..5499758 (-)	1362	WP_126312520.1	pitrilysin family protein	-
RNT40_RS25345 (RNT40_25345)	-	5499785..5501263 (-)	1479	WP_126312519.1	pitrilysin family protein	-
RNT40_RS25350 (RNT40_25350)	pilA	5501292..5502512 (+)	1221	WP_047326032.1	signal recognition particle-docking protein FtsY	Machinery gene
RNT40_RS25355 (RNT40_25355)	-	5502751..5503740 (+)	990	WP_126312518.1	tripartite tricarboxylate transporter substrate binding protein	-
RNT40_RS25360 (RNT40_25360)	cutA	5503727..5504125 (-)	399	WP_034366069.1	divalent-cation tolerance protein CutA	-
RNT40_RS25365 (RNT40_25365)	-	5504178..5505203 (-)	1026	WP_043791133.1	2-dehydropantoate 2-reductase	-
RNT40_RS25370 (RNT40_25370)	-	5505222..5505980 (-)	759	WP_034366067.1	class II aldolase/adducin family protein	-
RNT40_RS25375 (RNT40_25375)	-	5506048..5506593 (-)	546	WP_034366065.1	MarR family winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 42478.34 Da
• Isoelectric Point: 5.5266

>NTDB_id=886260 RNT40_RS25350 WP_047326032.1 5501292..5502512(+) (pilA) [Delftia tsuruhatensis strain HA60]
MFSFFKKKPTPSSAEISPADSSAAPEEAGIPATPPQDRAPDLPPGTPAPPAAADTGSAWWRKPFGGGKGDAAPPAAPTAP
TAAASTLAPADFIAAPEPTAKPEAEGASRQNWMQRLKAGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATEH
LLTDLRRRVKEAKATDPAAVKALLADALADLLRPLEKPLIIGEHQPTVVMVAGVNGAGKTTSIGKLTKHLADEGQSVLLA
AADTFRAAAREQLGVWANRNTVEIVSQEGGDPAAVSFDAVTAGRARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVTKAD
ATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREF
AQALLS

Nucleotide

• Length: 1221 bp

>NTDB_id=886260 RNT40_RS25350 WP_047326032.1 5501292..5502512(+) (pilA) [Delftia tsuruhatensis strain HA60]
ATGTTCAGTTTTTTCAAGAAAAAGCCCACCCCCTCCTCCGCCGAGATTTCCCCGGCGGACAGCAGCGCCGCGCCTGAAGA
GGCCGGCATTCCCGCAACCCCGCCGCAGGACCGCGCCCCAGACCTGCCCCCTGGCACGCCTGCCCCACCGGCCGCAGCCG
ACACCGGCAGCGCCTGGTGGCGCAAGCCCTTCGGCGGCGGCAAGGGCGATGCCGCCCCGCCTGCCGCACCCACTGCACCC
ACTGCTGCTGCTTCCACGCTCGCGCCTGCCGACTTCATTGCCGCACCCGAGCCCACGGCCAAGCCCGAAGCCGAAGGCGC
CAGCCGCCAGAACTGGATGCAGCGCCTCAAGGCCGGACTGCGCAAGACCGGCAGCAGCATCGCCACGGTCTTCACCGGCA
CGCAGATCAACGATGCGCTGTACGAAGAGCTGGAAGACGCCCTGCTGATGGCCGACACCGGCGTCAAGGCCACCGAGCAC
CTGCTCACCGACCTGCGCCGCCGCGTCAAGGAAGCCAAGGCCACCGACCCCGCCGCCGTCAAGGCGCTGCTGGCCGATGC
ACTGGCCGACCTGCTGCGCCCGCTGGAAAAGCCGCTGATCATCGGCGAGCACCAGCCTACCGTGGTCATGGTCGCTGGCG
TCAACGGCGCAGGCAAGACCACCTCCATCGGCAAGCTGACCAAGCATCTGGCCGACGAAGGCCAGAGCGTGCTGCTGGCT
GCCGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTCGGCGTCTGGGCCAACCGCAACACGGTGGAGATCGTCAGCCA
GGAAGGCGGTGATCCTGCAGCCGTGAGCTTTGATGCCGTCACCGCCGGCCGCGCCCGCAAGAAGGATGTGGTGCTGGTGG
ACACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGATGGAAGAGCTGCGCAAGATCCGCCGCGTGGTCACCAAGGCCGAT
GCCACGGCACCGCACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTGCGCGCCTTCGA
CGATGCACTGCAGCTCACGGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATTGCCC
AGGAACGGCCGATCCCCGTGTACTTCATCGGCGTGGGCGAAAAGGTCGAGGACCTGGAGACCTTCAACGCCAGGGAATTC
GCGCAGGCGCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (206-405)

• SRP54-type protein, helical bundle domain (SRP54_N) (125-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.227	100	0.502