Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RNT40_RS01530 Genome accession   NZ_CP135236
Coordinates   343590..344975 (+) Length   461 a.a.
NCBI ID   WP_016448587.1    Uniprot ID   A0AAX3SMY1
Organism   Delftia tsuruhatensis strain HA60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338590..349975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT40_RS01505 (RNT40_01505) lplT 339410..340711 (-) 1302 WP_016448591.1 lysophospholipid transporter LplT -
  RNT40_RS01510 (RNT40_01510) alr 340846..341949 (+) 1104 WP_047218852.1 alanine racemase -
  RNT40_RS01515 (RNT40_01515) - 341950..342390 (-) 441 WP_016448589.1 MarR family winged helix-turn-helix transcriptional regulator -
  RNT40_RS01520 (RNT40_01520) - 342487..343302 (+) 816 WP_017407487.1 siderophore-interacting protein -
  RNT40_RS01530 (RNT40_01530) radA 343590..344975 (+) 1386 WP_016448587.1 DNA repair protein RadA Machinery gene
  RNT40_RS01535 (RNT40_01535) - 345059..345505 (+) 447 WP_016448586.1 hypothetical protein -
  RNT40_RS01540 (RNT40_01540) - 345550..346488 (+) 939 WP_016448585.1 branched-chain amino acid transaminase -
  RNT40_RS01545 (RNT40_01545) - 346610..346819 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  RNT40_RS01550 (RNT40_01550) - 346851..347711 (-) 861 WP_016448584.1 capsular polysaccharide synthesis protein -
  RNT40_RS01555 (RNT40_01555) - 347842..349110 (+) 1269 WP_016448583.1 O-antigen ligase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48096.64 Da        Isoelectric Point: 7.6673

>NTDB_id=886248 RNT40_RS01530 WP_016448587.1 343590..344975(+) (radA) [Delftia tsuruhatensis strain HA60]
MAKDKTTFICNACGGSSPRWLGKCPACGAWNSLIEAVAEPAGAGKNRLSQPQGYAGLANAQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=886248 RNT40_RS01530 WP_016448587.1 343590..344975(+) (radA) [Delftia tsuruhatensis strain HA60]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGCGGCTCCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAATTCGCTGATCGAGGCCGTTGCCGAGCCTGCGGGCGCGGGCAAGAACCGGCTCAGCCAGCCGCAGGGCT
ATGCGGGCCTGGCCAATGCCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGACCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGATGCGCTGCACCGCGTGGGCTTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACGCAGCCGGCCGTGGTCGTCATCGACTCCATTCAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACC
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCGGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATACAGGCCCTGGTCGAC
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGGGACCGGTTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCATGCGGGCGTGGCCTGCGCGGACCAGGATGTCTTCGTCAACGCCGTGGGCGGCGTACGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGCGGCCGCGCCCTGCCCAAGGGATTCCTGGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAATGCGCCCAAGAAGGCCATTCCCGGCCTGACCGTGCATGCCGTGGAGCGCGTGGACGAAGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.915

0.482
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus pneumoniae Rx1

48.19

95.879

0.462
  radA Streptococcus pneumoniae D39

48.19

95.879

0.462
  radA Streptococcus pneumoniae R6

48.19

95.879

0.462
  radA Streptococcus pneumoniae TIGR4

48.19

95.879

0.462
  radA Streptococcus mitis SK321

48.961

93.926

0.46