Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RP314_RS20095 Genome accession   NZ_CP135199
Coordinates   4028678..4028968 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML21-47     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4023678..4033968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP314_RS20080 (RP314_20080) - 4023901..4025226 (-) 1326 WP_094247906.1 G5 and 3D domain-containing protein -
  RP314_RS20085 (RP314_20085) - 4025361..4026128 (-) 768 WP_032868379.1 TatD family hydrolase -
  RP314_RS20090 (RP314_20090) metG 4026204..4028195 (-) 1992 WP_077721688.1 methionine--tRNA ligase -
  RP314_RS20095 (RP314_20095) abrB 4028678..4028968 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  RP314_RS20100 (RP314_20100) rsmI 4029018..4029899 (-) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RP314_RS20105 (RP314_20105) - 4029874..4030173 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  RP314_RS20110 (RP314_20110) - 4030160..4030903 (-) 744 WP_077721687.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RP314_RS20115 (RP314_20115) yabA 4030964..4031323 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  RP314_RS20120 (RP314_20120) ricT 4031338..4032165 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  RP314_RS20125 (RP314_20125) holB 4032168..4033157 (-) 990 WP_077721686.1 DNA polymerase III subunit delta' -
  RP314_RS20130 (RP314_20130) - 4033169..4033609 (-) 441 WP_004264730.1 YaaR family protein -
  RP314_RS20135 (RP314_20135) darA 4033622..4033951 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=886245 RP314_RS20095 WP_169510469.1 4028678..4028968(+) (abrB) [Bacillus velezensis strain CMML21-47]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=886245 RP314_RS20095 WP_169510469.1 4028678..4028968(+) (abrB) [Bacillus velezensis strain CMML21-47]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979