Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RP314_RS18350 Genome accession   NZ_CP135199
Coordinates   3650926..3652074 (-) Length   382 a.a.
NCBI ID   WP_014304340.1    Uniprot ID   I2C1C2
Organism   Bacillus velezensis strain CMML21-47     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645926..3657074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP314_RS18320 (RP314_18320) - 3646061..3646819 (-) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  RP314_RS18325 (RP314_18325) - 3646813..3647760 (-) 948 WP_077721797.1 iron chelate uptake ABC transporter family permease subunit -
  RP314_RS18330 (RP314_18330) ceuB 3647750..3648703 (-) 954 WP_003156332.1 ABC transporter permease Machinery gene
  RP314_RS18335 (RP314_18335) - 3649118..3650482 (+) 1365 WP_077721796.1 aspartate kinase -
  RP314_RS18340 (RP314_18340) - 3650562..3650672 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  RP314_RS18345 (RP314_18345) phrC 3650823..3650942 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RP314_RS18350 (RP314_18350) rapC 3650926..3652074 (-) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  RP314_RS18355 (RP314_18355) - 3652227..3653660 (-) 1434 WP_172802825.1 HAMP domain-containing sensor histidine kinase -
  RP314_RS18360 (RP314_18360) - 3653647..3654330 (-) 684 WP_003156341.1 response regulator transcription factor -
  RP314_RS18365 (RP314_18365) - 3654543..3655979 (+) 1437 WP_077721794.1 ABC transporter permease -
  RP314_RS18370 (RP314_18370) - 3655994..3656677 (+) 684 WP_077721793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45494.75 Da        Isoelectric Point: 4.9939

>NTDB_id=886238 RP314_RS18350 WP_014304340.1 3650926..3652074(-) (rapC) [Bacillus velezensis strain CMML21-47]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=886238 RP314_RS18350 WP_014304340.1 3650926..3652074(-) (rapC) [Bacillus velezensis strain CMML21-47]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAAGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAACA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.199

100

0.822
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568