Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RP314_RS12355 Genome accession   NZ_CP135199
Coordinates   2461571..2462470 (-) Length   299 a.a.
NCBI ID   WP_077722193.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML21-47     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2456571..2467470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP314_RS12340 (RP314_12340) xerC 2456955..2457872 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  RP314_RS12345 (RP314_12345) trmFO 2457942..2459249 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RP314_RS12350 (RP314_12350) topA 2459314..2461389 (-) 2076 WP_025649465.1 type I DNA topoisomerase -
  RP314_RS12355 (RP314_12355) dprA 2461571..2462470 (-) 900 WP_077722193.1 DNA-processing protein DprA Machinery gene
  RP314_RS12360 (RP314_12360) sucD 2462535..2463437 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  RP314_RS12365 (RP314_12365) sucC 2463466..2464623 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  RP314_RS12370 (RP314_12370) - 2464798..2465079 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  RP314_RS12375 (RP314_12375) - 2465076..2466779 (-) 1704 WP_077722192.1 glycosyl transferase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32862.05 Da        Isoelectric Point: 8.4593

>NTDB_id=886215 RP314_RS12355 WP_077722193.1 2461571..2462470(-) (dprA) [Bacillus velezensis strain CMML21-47]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTVPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSTRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=886215 RP314_RS12355 WP_077722193.1 2461571..2462470(-) (dprA) [Bacillus velezensis strain CMML21-47]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGTGCCCGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAACCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGAAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCAGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365