Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RP314_RS06680 Genome accession   NZ_CP135199
Coordinates   1293526..1294278 (+) Length   250 a.a.
NCBI ID   WP_071181911.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML21-47     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288526..1299278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP314_RS06665 (RP314_06665) - 1288749..1288940 (-) 192 WP_003152639.1 hypothetical protein -
  RP314_RS06670 (RP314_06670) - 1289393..1292035 (+) 2643 WP_060674740.1 valine--tRNA ligase -
  RP314_RS06675 (RP314_06675) - 1292094..1293386 (+) 1293 WP_077722653.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RP314_RS06680 (RP314_06680) comC 1293526..1294278 (+) 753 WP_071181911.1 A24 family peptidase Machinery gene
  RP314_RS06685 (RP314_06685) - 1294405..1295406 (+) 1002 WP_077722652.1 SPOR domain-containing protein -
  RP314_RS06690 (RP314_06690) - 1295547..1296116 (+) 570 WP_077722651.1 nucleoside triphosphate pyrophosphatase -
  RP314_RS06695 (RP314_06695) radC 1296148..1296843 (+) 696 WP_007408165.1 DNA repair protein RadC -
  RP314_RS06700 (RP314_06700) mreB 1296935..1297948 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  RP314_RS06705 (RP314_06705) mreC 1297979..1298842 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27012.64 Da        Isoelectric Point: 9.2521

>NTDB_id=886192 RP314_RS06680 WP_071181911.1 1293526..1294278(+) (comC) [Bacillus velezensis strain CMML21-47]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=886192 RP314_RS06680 WP_071181911.1 1293526..1294278(+) (comC) [Bacillus velezensis strain CMML21-47]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTTGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCAGGAGCTGTTTGTGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584