Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RJD11_RS13940 Genome accession   NZ_CP135184
Coordinates   2760088..2760855 (-) Length   255 a.a.
NCBI ID   WP_015240232.1    Uniprot ID   -
Organism   Bacillus velezensis strain NDB     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2755088..2765855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS13920 (RJD11_13920) - 2755290..2756102 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  RJD11_RS13925 (RJD11_13925) ccpN 2756128..2756766 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  RJD11_RS13930 (RJD11_13930) glyS 2756867..2758906 (-) 2040 WP_059368104.1 glycine--tRNA ligase subunit beta -
  RJD11_RS13935 (RJD11_13935) glyQ 2758899..2759786 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  RJD11_RS13940 (RJD11_13940) recO 2760088..2760855 (-) 768 WP_015240232.1 DNA repair protein RecO Machinery gene
  RJD11_RS13945 (RJD11_13945) - 2760892..2761035 (-) 144 WP_007408286.1 YqzL family protein -
  RJD11_RS13950 (RJD11_13950) era 2761190..2762095 (-) 906 WP_007408285.1 GTPase Era -
  RJD11_RS13955 (RJD11_13955) - 2762076..2762486 (-) 411 WP_003152976.1 cytidine deaminase -
  RJD11_RS13960 (RJD11_13960) - 2762610..2762984 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  RJD11_RS13965 (RJD11_13965) ybeY 2762965..2763438 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  RJD11_RS13970 (RJD11_13970) - 2763439..2765571 (-) 2133 WP_315563083.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29294.89 Da        Isoelectric Point: 8.7092

>NTDB_id=886050 RJD11_RS13940 WP_015240232.1 2760088..2760855(-) (recO) [Bacillus velezensis strain NDB]
MLTKSEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=886050 RJD11_RS13940 WP_015240232.1 2760088..2760855(-) (recO) [Bacillus velezensis strain NDB]
ATGCTGACTAAAAGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.235

100

0.882