Detailed information
Bioinformatically predicted
Overview
| Name | comB2 | Type | Machinery gene |
| Locus tag | K6J74_RS07415 | Genome accession | NZ_AP024819 |
| Coordinates | 1454683..1454946 (-) | Length | 87 a.a. |
| NCBI ID | WP_221271805.1 | Uniprot ID | - |
| Organism | Helicobacter sp. NHP19-012 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1449683..1459946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J74_RS07390 (NHP190012_15350) | - | 1450285..1451733 (-) | 1449 | WP_221271795.1 | glutamate decarboxylase | - |
| K6J74_RS07395 (NHP190012_15360) | - | 1452192..1452893 (+) | 702 | WP_221271797.1 | outer membrane beta-barrel protein | - |
| K6J74_RS07400 (NHP190012_15370) | fliW | 1452942..1453346 (+) | 405 | WP_221271800.1 | flagellar assembly protein FliW | - |
| K6J74_RS07405 (NHP190012_15380) | murG | 1453353..1454420 (+) | 1068 | WP_221271803.1 | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | - |
| K6J74_RS07410 (NHP190012_15390) | comB3 | 1454417..1454683 (-) | 267 | WP_221272629.1 | competence protein ComB | Machinery gene |
| K6J74_RS07415 (NHP190012_15400) | comB2 | 1454683..1454946 (-) | 264 | WP_221271805.1 | TrbC/VirB2 family protein | Machinery gene |
| K6J74_RS07420 (NHP190012_15410) | - | 1455216..1456019 (+) | 804 | WP_221271809.1 | HrcA family transcriptional regulator | - |
| K6J74_RS07425 (NHP190012_15420) | grpE | 1456016..1456570 (+) | 555 | WP_221271811.1 | nucleotide exchange factor GrpE | - |
| K6J74_RS07430 (NHP190012_15430) | dnaK | 1456596..1458458 (+) | 1863 | WP_221271812.1 | molecular chaperone DnaK | - |
| K6J74_RS07435 (NHP190012_15440) | - | 1458852..1459109 (+) | 258 | WP_221271813.1 | hypothetical protein | - |
| K6J74_RS08800 (NHP190012_15450) | - | 1459130..1459264 (+) | 135 | WP_260321591.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10109.12 Da Isoelectric Point: 8.6884
>NTDB_id=88605 K6J74_RS07415 WP_221271805.1 1454683..1454946(-) (comB2) [Helicobacter sp. NHP19-012]
MRWLWIFLALDFLQADGGDNFFKAIEAQLQSNTAKGILMLIFIGIAFYVWRNLDRWRDILFTILGVVLGIMLFFKAPALA
SWFMGLF
MRWLWIFLALDFLQADGGDNFFKAIEAQLQSNTAKGILMLIFIGIAFYVWRNLDRWRDILFTILGVVLGIMLFFKAPALA
SWFMGLF
Nucleotide
Download Length: 264 bp
>NTDB_id=88605 K6J74_RS07415 WP_221271805.1 1454683..1454946(-) (comB2) [Helicobacter sp. NHP19-012]
TTGCGGTGGTTGTGGATCTTTTTAGCTTTGGATTTTTTACAAGCCGATGGGGGGGATAATTTTTTTAAAGCCATTGAGGC
GCAACTGCAAAGCAACACGGCCAAGGGCATTTTAATGCTGATTTTTATCGGCATTGCCTTTTATGTGTGGCGTAATTTAG
ACCGCTGGCGGGATATTCTCTTTACAATCTTGGGCGTGGTGCTAGGAATCATGCTCTTTTTTAAGGCTCCGGCGCTGGCT
TCGTGGTTTATGGGGTTGTTTTGA
TTGCGGTGGTTGTGGATCTTTTTAGCTTTGGATTTTTTACAAGCCGATGGGGGGGATAATTTTTTTAAAGCCATTGAGGC
GCAACTGCAAAGCAACACGGCCAAGGGCATTTTAATGCTGATTTTTATCGGCATTGCCTTTTATGTGTGGCGTAATTTAG
ACCGCTGGCGGGATATTCTCTTTACAATCTTGGGCGTGGTGCTAGGAATCATGCTCTTTTTTAAGGCTCCGGCGCTGGCT
TCGTGGTTTATGGGGTTGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB2 | Helicobacter pylori 26695 |
70 |
91.954 |
0.644 |