Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   K6J74_RS07410 Genome accession   NZ_AP024819
Coordinates   1454417..1454683 (-) Length   88 a.a.
NCBI ID   WP_221272629.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449417..1459683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS07390 (NHP190012_15350) - 1450285..1451733 (-) 1449 WP_221271795.1 glutamate decarboxylase -
  K6J74_RS07395 (NHP190012_15360) - 1452192..1452893 (+) 702 WP_221271797.1 outer membrane beta-barrel protein -
  K6J74_RS07400 (NHP190012_15370) fliW 1452942..1453346 (+) 405 WP_221271800.1 flagellar assembly protein FliW -
  K6J74_RS07405 (NHP190012_15380) murG 1453353..1454420 (+) 1068 WP_221271803.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  K6J74_RS07410 (NHP190012_15390) comB3 1454417..1454683 (-) 267 WP_221272629.1 competence protein ComB Machinery gene
  K6J74_RS07415 (NHP190012_15400) comB2 1454683..1454946 (-) 264 WP_221271805.1 TrbC/VirB2 family protein Machinery gene
  K6J74_RS07420 (NHP190012_15410) - 1455216..1456019 (+) 804 WP_221271809.1 HrcA family transcriptional regulator -
  K6J74_RS07425 (NHP190012_15420) grpE 1456016..1456570 (+) 555 WP_221271811.1 nucleotide exchange factor GrpE -
  K6J74_RS07430 (NHP190012_15430) dnaK 1456596..1458458 (+) 1863 WP_221271812.1 molecular chaperone DnaK -
  K6J74_RS07435 (NHP190012_15440) - 1458852..1459109 (+) 258 WP_221271813.1 hypothetical protein -
  K6J74_RS08800 (NHP190012_15450) - 1459130..1459264 (+) 135 WP_260321591.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9883.66 Da        Isoelectric Point: 4.4261

>NTDB_id=88604 K6J74_RS07410 WP_221272629.1 1454417..1454683(-) (comB3) [Helicobacter sp. NHP19-012]
MECPLLVVSVANLQAISTKDKFLWLNAKSWIVSIFVPFVLWPWLGTLWALALYGGFLALFSVLEFFDEDIADILIAHSRL
TGATSFYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=88604 K6J74_RS07410 WP_221272629.1 1454417..1454683(-) (comB3) [Helicobacter sp. NHP19-012]
ATGGAGTGCCCTTTGTTGGTCGTGTCTGTAGCAAATTTACAAGCCATTTCTACAAAGGACAAATTTCTATGGCTCAATGC
CAAGTCGTGGATTGTGTCGATCTTCGTGCCTTTTGTGCTGTGGCCGTGGCTGGGCACACTGTGGGCTTTGGCGTTGTATG
GGGGGTTTTTAGCCCTTTTTAGCGTGTTGGAGTTCTTTGATGAGGACATTGCCGACATTTTAATCGCCCACTCTAGGCTC
ACGGGGGCGACAAGTTTTTACGCCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

61.446

94.318

0.58

Multiple sequence alignment