Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RJD11_RS07535 Genome accession   NZ_CP135184
Coordinates   1414899..1415363 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain NDB     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1409899..1420363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS07515 (RJD11_07515) - 1410380..1412200 (+) 1821 WP_043021222.1 PAS domain-containing protein -
  RJD11_RS07520 (RJD11_07520) - 1412181..1413394 (-) 1214 Protein_1425 aminotransferase A -
  RJD11_RS07525 (RJD11_07525) - 1413595..1413756 (-) 162 WP_007409608.1 hypothetical protein -
  RJD11_RS07530 (RJD11_07530) cheV 1413945..1414856 (+) 912 WP_043021221.1 chemotaxis protein CheV -
  RJD11_RS07535 (RJD11_07535) kre 1414899..1415363 (-) 465 WP_003154622.1 YkyB family protein Regulator
  RJD11_RS07540 (RJD11_07540) - 1415486..1416778 (-) 1293 WP_015239757.1 MFS transporter -
  RJD11_RS07545 (RJD11_07545) - 1416854..1417348 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  RJD11_RS07550 (RJD11_07550) - 1417423..1418286 (-) 864 WP_085341949.1 metallophosphoesterase -
  RJD11_RS07555 (RJD11_07555) fadH 1418431..1419195 (+) 765 WP_122503878.1 2,4-dienoyl-CoA reductase -
  RJD11_RS07560 (RJD11_07560) - 1419360..1419856 (+) 497 Protein_1433 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=886032 RJD11_RS07535 WP_003154622.1 1414899..1415363(-) (kre) [Bacillus velezensis strain NDB]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=886032 RJD11_RS07535 WP_003154622.1 1414899..1415363(-) (kre) [Bacillus velezensis strain NDB]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929