Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RJD11_RS05805 Genome accession   NZ_CP135184
Coordinates   1116793..1117746 (+) Length   317 a.a.
NCBI ID   WP_076423877.1    Uniprot ID   -
Organism   Bacillus velezensis strain NDB     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111793..1122746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS05780 (RJD11_05780) argF 1113611..1114582 (+) 972 WP_085341881.1 ornithine carbamoyltransferase -
  RJD11_RS05785 (RJD11_05785) - 1114658..1114837 (+) 180 WP_003155070.1 YjzC family protein -
  RJD11_RS05790 (RJD11_05790) - 1114874..1115059 (-) 186 WP_007409129.1 YjzD family protein -
  RJD11_RS05795 (RJD11_05795) - 1115320..1116054 (+) 735 WP_080130436.1 hypothetical protein -
  RJD11_RS05800 (RJD11_05800) - 1116137..1116703 (+) 567 WP_007409126.1 hypothetical protein -
  RJD11_RS05805 (RJD11_05805) med 1116793..1117746 (+) 954 WP_076423877.1 BMP family ABC transporter substrate-binding protein Regulator
  RJD11_RS05810 (RJD11_05810) comZ 1117759..1117950 (+) 192 WP_003155061.1 ComZ family protein Regulator
  RJD11_RS05815 (RJD11_05815) - 1117979..1118197 (-) 219 WP_007409123.1 hypothetical protein -
  RJD11_RS05820 (RJD11_05820) - 1118364..1119302 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  RJD11_RS05825 (RJD11_05825) fabF 1119325..1120563 (+) 1239 WP_012117277.1 beta-ketoacyl-ACP synthase II -
  RJD11_RS05830 (RJD11_05830) - 1120647..1121432 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  RJD11_RS05835 (RJD11_05835) - 1121606..1122592 (+) 987 WP_012117279.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35314.93 Da        Isoelectric Point: 4.6067

>NTDB_id=886024 RJD11_RS05805 WP_076423877.1 1116793..1117746(+) (med) [Bacillus velezensis strain NDB]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=886024 RJD11_RS05805 WP_076423877.1 1116793..1117746(+) (med) [Bacillus velezensis strain NDB]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACTATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTTGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAACACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAACAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785