Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RJD11_RS01770 Genome accession   NZ_CP135184
Coordinates   329436..329873 (-) Length   145 a.a.
NCBI ID   WP_218791482.1    Uniprot ID   -
Organism   Bacillus velezensis strain NDB     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 324436..334873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS01745 (RJD11_01745) - 325455..326591 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  RJD11_RS01750 (RJD11_01750) - 326606..327040 (+) 435 WP_059366555.1 RDD family protein -
  RJD11_RS01755 (RJD11_01755) - 327158..327436 (+) 279 WP_263612330.1 YckD family protein -
  RJD11_RS01760 (RJD11_01760) - 327540..328976 (+) 1437 WP_072588782.1 glycoside hydrolase family 1 protein -
  RJD11_RS01765 (RJD11_01765) nin/comJ 329017..329415 (-) 399 WP_218791481.1 competence protein ComJ Regulator
  RJD11_RS01770 (RJD11_01770) nucA/comI 329436..329873 (-) 438 WP_218791482.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RJD11_RS01775 (RJD11_01775) hxlB 330230..330787 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  RJD11_RS01780 (RJD11_01780) hxlA 330784..331419 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  RJD11_RS01785 (RJD11_01785) - 331651..332013 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16042.33 Da        Isoelectric Point: 8.4850

>NTDB_id=886012 RJD11_RS01770 WP_218791482.1 329436..329873(-) (nucA/comI) [Bacillus velezensis strain NDB]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQAVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=886012 RJD11_RS01770 WP_218791482.1 329436..329873(-) (nucA/comI) [Bacillus velezensis strain NDB]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGGCCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634