Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxP   Type   Regulator
Locus tag   QYQ95_RS17295 Genome accession   NZ_CP135177
Coordinates   489682..490776 (-) Length   364 a.a.
NCBI ID   WP_010428642.1    Uniprot ID   A0AAN0LXX0
Organism   Vibrio cyclitrophicus ZF270     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 484682..495776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS17275 (QYQ95_17275) - 485409..485717 (+) 309 WP_080573667.1 DUF1289 domain-containing protein -
  QYQ95_RS17280 (QYQ95_17280) - 485805..486155 (-) 351 WP_010428650.1 HopJ type III effector protein -
  QYQ95_RS17285 (QYQ95_17285) - 486349..487008 (+) 660 WP_016800200.1 PilZ domain-containing protein -
  QYQ95_RS17290 (QYQ95_17290) luxQ 487115..489682 (-) 2568 WP_010428645.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  QYQ95_RS17295 (QYQ95_17295) luxP 489682..490776 (-) 1095 WP_010428642.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QYQ95_RS17300 (QYQ95_17300) - 491083..491397 (-) 315 WP_010428640.1 GIY-YIG nuclease family protein -
  QYQ95_RS17305 (QYQ95_17305) - 491398..492054 (-) 657 WP_010428637.1 YceH family protein -
  QYQ95_RS17310 (QYQ95_17310) - 492119..492319 (-) 201 WP_016769134.1 hypothetical protein -
  QYQ95_RS17315 (QYQ95_17315) - 492515..492829 (+) 315 WP_004730049.1 DUF496 family protein -
  QYQ95_RS17320 (QYQ95_17320) - 493000..493626 (+) 627 WP_016800197.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  QYQ95_RS17325 (QYQ95_17325) - 493796..494032 (+) 237 WP_010428622.1 hypothetical protein -

Sequence


Protein


Download         Length: 364 a.a.        Molecular weight: 41365.75 Da        Isoelectric Point: 6.0023

>NTDB_id=885998 QYQ95_RS17295 WP_010428642.1 489682..490776(-) (luxP) [Vibrio cyclitrophicus ZF270]
MKRLLMLFGLAVFSASALSHGTRVLNGYWEYQDYLAKFPEQKALTDKMVEAVQNHPVPLKRAQDRPITISVVYPGQQISD
YWVRNIQAFEKRLDRLRINYQINQVFTRVNADISQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLADYFKQVTPPNSKYSVLYRSEGYISDARGDTFIHDVNTDTNFDLKSSFYTKSD
KESGYQAAKISIANNKDLDFIYACATDVALGAVEAIRESRKDILINGWGGGSAELEAIERGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGEFEVVTKEDSPERISELKKRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=885998 QYQ95_RS17295 WP_010428642.1 489682..490776(-) (luxP) [Vibrio cyclitrophicus ZF270]
ATGAAACGTTTATTGATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCACGGTACCCGTGTCCTCAATGG
GTATTGGGAATACCAGGATTATCTTGCTAAATTTCCAGAACAAAAAGCGCTGACGGATAAGATGGTCGAAGCTGTACAAA
ACCACCCCGTGCCATTAAAGCGAGCTCAAGATAGACCGATCACAATTTCTGTTGTTTACCCTGGCCAACAGATCTCCGAT
TATTGGGTCCGAAATATCCAAGCCTTTGAGAAACGTCTCGACAGGTTAAGAATTAATTACCAAATAAACCAAGTGTTTAC
TCGTGTCAATGCGGATATATCTCAGCAGAGTATTTCTTTGCAAGAGGCGATTGAAAACAAGACGGATTACTTAATTTTTA
CGCTAGATACAACTCGACACCGTAAATTTATTGAGCATGTATTGAGCTCTACGGATACCAAGTTGATCCTGCAAAACATC
ACCACTCCAGTACGTGCGTGGGCAGACAGGCAGCCATTTATGTATGTGGGTTTTGACCATGCAACAGGCAGCTTGAAGTT
GGCGGACTATTTTAAACAAGTGACACCTCCTAACAGTAAGTACTCGGTTCTATATCGTTCAGAGGGCTACATTAGTGATG
CTCGTGGCGATACCTTTATCCATGATGTAAACACCGATACTAATTTTGATCTCAAGTCTTCTTTCTACACTAAATCAGAT
AAGGAAAGTGGTTACCAGGCAGCTAAAATCAGCATTGCGAACAATAAGGATCTAGACTTTATCTATGCATGTGCAACTGA
TGTCGCTCTAGGTGCTGTAGAAGCGATTCGTGAGTCGCGTAAAGATATCTTAATTAATGGCTGGGGAGGCGGTTCTGCTG
AACTTGAAGCGATTGAGAGAGGTGACTTAGATGTTACTGTCATGCGAATGAATGACGATACGGGTATTGCGATGGCAGAA
GCTATCAAATGGGACCTTGCTGGGTTGGAAGTTCCTACCGTTTATTCTGGTGAGTTCGAAGTTGTCACCAAAGAAGACTC
TCCGGAACGTATTTCAGAACTTAAGAAGCGTGCATTTAGGTACTCAGGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.934

100

0.643