Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QYQ95_RS08700 Genome accession   NZ_CP135176
Coordinates   1964027..1965208 (+) Length   393 a.a.
NCBI ID   WP_016768012.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus ZF270     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959027..1970208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS08680 (QYQ95_08680) - 1959092..1960111 (+) 1020 WP_010441249.1 GTP-binding protein -
  QYQ95_RS08685 (QYQ95_08685) - 1960240..1961172 (-) 933 WP_016768014.1 aspartoacylase -
  QYQ95_RS08690 (QYQ95_08690) - 1961420..1962316 (-) 897 WP_016768013.1 EamA family transporter -
  QYQ95_RS08695 (QYQ95_08695) - 1962421..1963818 (+) 1398 WP_010441253.1 PLP-dependent aminotransferase family protein -
  QYQ95_RS08700 (QYQ95_08700) cqsA 1964027..1965208 (+) 1182 WP_016768012.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QYQ95_RS08705 (QYQ95_08705) - 1965330..1967378 (-) 2049 WP_016768011.1 hybrid sensor histidine kinase/response regulator -
  QYQ95_RS08710 (QYQ95_08710) - 1967734..1967949 (-) 216 WP_016784527.1 hypothetical protein -
  QYQ95_RS08715 (QYQ95_08715) - 1968268..1969170 (-) 903 WP_016768008.1 Vmh family MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43779.71 Da        Isoelectric Point: 6.1431

>NTDB_id=885982 QYQ95_RS08700 WP_016768012.1 1964027..1965208(+) (cqsA) [Vibrio cyclitrophicus ZF270]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWSANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFDCALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKRAKALTTGLKRIGFNIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=885982 QYQ95_RS08700 WP_016768012.1 1964027..1965208(+) (cqsA) [Vibrio cyclitrophicus ZF270]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCCAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
GCTCTCTCAATCAGGTTGGTCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAGCGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACTAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGCCCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACGCGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCAGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTCGGCCAGCAACAGGCAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGACTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547