Detailed information NTG0885981

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: QYQ95_RS08625
• Genome accession: NZ_CP135176
• Coordinates: 1948215..1949639 (+)
• Length: 474 a.a.
• NCBI ID: WP_010441226.1
• Uniprot ID: A0AAN0LJ83
• Organism: Vibrio cyclitrophicus ZF270
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1943215..1954639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYQ95_RS08610 (QYQ95_08610)	-	1945612..1946322 (-)	711	WP_016788744.1	molecular chaperone	-
QYQ95_RS08615 (QYQ95_08615)	-	1946319..1946756 (-)	438	WP_016786202.1	DUF4402 domain-containing protein	-
QYQ95_RS08620 (QYQ95_08620)	-	1946810..1947244 (-)	435	WP_010441224.1	DUF4402 domain-containing protein	-
QYQ95_RS08625 (QYQ95_08625)	sbcB	1948215..1949639 (+)	1425	WP_010441226.1	exodeoxyribonuclease I	Machinery gene
QYQ95_RS08630 (QYQ95_08630)	-	1949665..1950036 (+)	372	WP_010441228.1	CidA/LrgA family protein	-
QYQ95_RS08635 (QYQ95_08635)	-	1950039..1950716 (+)	678	WP_010441230.1	LrgB family protein	-
QYQ95_RS08640 (QYQ95_08640)	cdd	1951087..1951974 (+)	888	WP_010441232.1	cytidine deaminase	-
QYQ95_RS08645 (QYQ95_08645)	purT	1952141..1953316 (+)	1176	WP_010441234.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
QYQ95_RS08650 (QYQ95_08650)	-	1953447..1954100 (-)	654	WP_016768016.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54631.96 Da
• Isoelectric Point: 4.9171

>NTDB_id=885981 QYQ95_RS08625 WP_010441226.1 1948215..1949639(+) (sbcB) [Vibrio cyclitrophicus ZF270]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=885981 QYQ95_RS08625 WP_010441226.1 1948215..1949639(+) (sbcB) [Vibrio cyclitrophicus ZF270]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATTACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATCCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATGCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCCGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAACTTAGCGCTATTACGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGATGACGTAGACACTCATCTGTATGACGGCTTCTTCTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTCAAACTGACCCAAATAATTTGGCTGCTTTAGACATCACTTTTGGTGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGTGCTCGTCATTTCCCGTGGACGTTAGACGAAGCGGAACAACTGAAATGGGC
TAACCACTGTCGAGAGTTTTACGAAAGTCGCTTAGAAGAGTACATGCTGAACCTAGAAAACCTCGCACACGAGCATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764