Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QYQ95_RS01090 Genome accession   NZ_CP135176
Coordinates   237430..238434 (-) Length   334 a.a.
NCBI ID   WP_010435348.1    Uniprot ID   A0AAN0LNA0
Organism   Vibrio cyclitrophicus ZF270     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 232430..243434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS01060 (QYQ95_01060) zapB 232600..232842 (+) 243 WP_010435362.1 cell division protein ZapB -
  QYQ95_RS01065 (QYQ95_01065) rraA 232949..233467 (-) 519 WP_010435359.1 ribonuclease E activity regulator RraA -
  QYQ95_RS01070 (QYQ95_01070) - 233541..234458 (-) 918 WP_010435357.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QYQ95_RS01075 (QYQ95_01075) hslU 234614..235954 (-) 1341 WP_016767976.1 HslU--HslV peptidase ATPase subunit -
  QYQ95_RS01080 (QYQ95_01080) hslV 236013..236561 (-) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  QYQ95_RS01085 (QYQ95_01085) - 236768..237307 (-) 540 WP_010435351.1 SPOR domain-containing protein -
  QYQ95_RS01090 (QYQ95_01090) cytR 237430..238434 (-) 1005 WP_010435348.1 DNA-binding transcriptional regulator CytR Regulator
  QYQ95_RS01095 (QYQ95_01095) priA 238675..240876 (-) 2202 WP_010435346.1 primosomal protein N' -
  QYQ95_RS01100 (QYQ95_01100) rpmE 241208..241426 (+) 219 WP_004737142.1 50S ribosomal protein L31 -
  QYQ95_RS01105 (QYQ95_01105) - 241758..243047 (+) 1290 WP_016790179.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36507.05 Da        Isoelectric Point: 6.4911

>NTDB_id=885956 QYQ95_RS01090 WP_010435348.1 237430..238434(-) (cytR) [Vibrio cyclitrophicus ZF270]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPISATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=885956 QYQ95_RS01090 WP_010435348.1 237430..238434(-) (cytR) [Vibrio cyclitrophicus ZF270]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCTGTTTCTACTCGTAAGCGAGTCGAAGCGGCAGTGCTAGAAGCTGGATACTCACCCAACACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTTGCTGAAATCATTCGTGGT
ATCGAAGACGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCTTT
TGTTAACTTGGTTTTCACCAAGCAAGCTGACGGTATGCTGCTGCTTGGCACTGACCATCCGTTTGATGTCAGCAAGCCTG
AACAAAAGAATTTACCGCCGATGGTGATGGCATGTGAATTCGCCCCTGAGCTCGAATTACCGACAGTACACATCGATAAC
TTAACCTCTGCATTTGAAGCGGTTAACTACCTAGCCCAATTAGGTCATAAGCGTATCGCTCAAATATCTGGCCCAATATC
AGCGACACTGTGTAAATTCCGCCAACAAGGCTACCAACAAGCATTGCGCCGTGCGGGTGTATCAATGAACCCAGCTTATA
GCACGGTCGGTGACTTTACCTTTGAAGCTGGTGCTCAAGCGGTTCGTCAACTTCTAGCTCTGCCCGAGCAACCTACTGCT
ATTTTCTGTCATAACGATGCAATGGCGATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGCGTCCCTCAAGATTT
ATCAATTGTTGGCTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCACTGACAACAATTTCTCAGCCTCGTTACG
AGATTGGACGTCAAGCCATGCTAATGATGCTTGATCTCCTTAAAGGTAACGATGTTCAAGCTGGTTCACGTCTGCTTGAA
GCTAAACTCGTGGTTCGAGGCAGTACTGCACCACCGCGAATTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.688

99.701

0.874