Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RQ468_RS24980 Genome accession   NZ_CP135175
Coordinates   5358426..5358983 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM_Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5353426..5363983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ468_RS24960 (RQ468_24960) pilR 5354702..5356039 (+) 1338 WP_023088571.1 two-component system response regulator PilR Regulator
  RQ468_RS24965 (RQ468_24965) thiO 5356085..5357179 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  RQ468_RS24970 (RQ468_24970) - 5357314..5357823 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  RQ468_RS24975 (RQ468_24975) - 5357929..5358435 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  RQ468_RS24980 (RQ468_24980) pilV 5358426..5358983 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  RQ468_RS24985 (RQ468_24985) pilW 5358980..5359804 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  RQ468_RS24990 (RQ468_24990) pilX 5359801..5360388 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  RQ468_RS24995 (RQ468_24995) pilY1 5360400..5363891 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=885946 RQ468_RS24980 WP_003119423.1 5358426..5358983(+) (pilV) [Pseudomonas aeruginosa strain PARM_Z1]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=885946 RQ468_RS24980 WP_003119423.1 5358426..5358983(+) (pilV) [Pseudomonas aeruginosa strain PARM_Z1]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995